Lates calcarifer (barramundi perch): 108886167
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Entry
108886167 CDS
T04895
Symbol
pdgfab
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor subunit A
KO
K04359
platelet-derived growth factor subunit A
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
lcf04510
Focal adhesion
lcf04540
Gap junction
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108886167 (pdgfab)
04020 Calcium signaling pathway
108886167 (pdgfab)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108886167 (pdgfab)
04540 Gap junction
108886167 (pdgfab)
09142 Cell motility
04810 Regulation of actin cytoskeleton
108886167 (pdgfab)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
lcf04052
]
108886167 (pdgfab)
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108886167 (pdgfab)
Cytokines and neuropeptides [BR:
lcf04052
]
Cytokines
Growth factors (RTK binding)
108886167 (pdgfab)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Growth factors/receptors
108886167 (pdgfab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF_N
PDGF
Motif
Other DBs
NCBI-GeneID:
108886167
NCBI-ProteinID:
XP_018536373
UniProt:
A0AAJ7V4Y8
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Position
LG11:10635905..10656404
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AA seq
208 aa
AA seq
DB search
MRATLCYFLLWTAYLLLVTAEEVEFPQELIDRLSHSEIHSISDLQRLLEIDSVGTGNDVI
EEPKHHKHHNLHKNYSRHHGHYNDLKSSQLHSRRKRSIVEEAVPAVCKTRTVIYEIPRSQ
VDPTSANFLIWPPCVEVKRCTGCCNTSNMRCHPSRKHHRTVKVAKVEYVRRRPKLKEVFV
RLEDHLECVCTSQHHVVEHSEPETVDVR
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgagagccacactttgttacttcctgctgtggacggcgtacctgctgctggtcaccgct
gaggaagtggagtttccccaggagctgatagacagactgtcccacagtgaaatccacagc
atcagcgacctccagcggctactggagattgactccgtaggtacgggaaacgatgttatc
gaagagcccaagcaccacaaacaccacaacctccataagaactactcccgtcatcatggt
cactacaatgacctgaagagctcccagctccacagccgacgcaagaggagtattgtagag
gaggcggtcccggcggtgtgtaagacgcggacggtgatctacgagatccccaggagccaa
gtggatcccacgtctgccaacttcctgatatggccaccctgtgtggaggtgaagcgctgc
acgggctgctgcaacaccagcaacatgcgctgtcacccttcccgcaagcaccaccgcacc
gttaaggtggccaaggtggagtacgtgaggaggagacccaagctgaaagaggtctttgtg
cggttagaagaccacctggagtgtgtgtgcacgtcacaacatcatgtggtggagcactca
gaaccagaaacagtggacgtgaggtga
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