Lates calcarifer (barramundi perch): 108886853
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Entry
108886853 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 7-like
KO
K10260
F-box and WD-40 domain protein 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108886853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108886853
04121 Ubiquitin system [BR:
lcf04121
]
108886853
Membrane trafficking [BR:
lcf04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
108886853
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108886853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR55
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_EML
WD40_MABP1-WDR62_2nd
F-box-like
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_Nup120_160
Beta-prop_DCAF4
F-box
PQQ_2
Ge1_WD40
Beta-prop_IFT122_1st
Beta-prop_VPS8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
108886853
NCBI-ProteinID:
XP_018537442
UniProt:
A0AAJ7PSI8
LinkDB
All DBs
Position
Unknown
AA seq
722 aa
AA seq
DB search
MSEEKMEREHQERIEEERRLKTPSRRREGEEEEEEEEAEMMTAKEFKDKAQRDLIGGQTP
ISASSSFTSSPLLLSSLRRGRGGGRGEDDGEEDEVRVAIVTIEDESCPSEPFGTTHLETA
NQITRTEEAGGKEEKEEEQEGEMEEEMEEEEEANSDEKEEEEDEKDAEVTSPSLHLQSQM
KRKLDHGPDGRPFPSGKKHCKGNGYLSPSSLVQATPTTFGDLRLANGHSAQRRRVTSGPP
PSGLQDWLHTFQAWSGPERLLALDELIDRCETSQVKHMMQVIEPQFQRDFISLLPKELAL
YVLTFLAPRDLLQAAQTCRYWRILAEDNLLWREKCREEGISECVSSRRRKCARPGAAVSP
WKSAYIRQHRIENNWRKGDTREPMVLKGHDDHVITCLQFSGDLIVSGSDDNTLKVWSAIT
GKCLRTLXGHTGGVWCSQMAVATVISGSTDRTLRVWDAESGECVHTLYGHTSTVRCMHLH
GNRVVSGSRDTTLRVWDVSTGRCEHVLTGHVAAVRCVQYDGRRVVSGGYDYMVKVWDPET
EACLHTLQGHTNRVYSLQFDGVFVVSGSLDTSIRVWDAETGGCVHTLTGHQSLTSGMELR
DNILVSGNADSTVRVWDIRTGQCLHTLQGPNKHQSAVTCLQFCRGLVLSSSDDGTVKLWD
LRTGAWLRDVVALQSRGSGGVVWRIRASDTRLVCAAGSRNGTEETKLLVLDFDLDDKKKE
TE
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaaaagatggagagagagcatcaagaaagaatagaggaggagagaagacta
aaaactccatccaggagaagagagggagaagaggaggaggaagaggaggaggcagaaatg
atgacggccaaagagtttaaagacaaagcacaaagagatttgattggtggacagactcca
atctccgcctcctcctccttcacctcctctcctctcctcctctcctctctccgccgagga
agaggaggaggaagaggcgaagacgacggggaggaagacgaggtcagagtcgccatagtc
accatcgaggacgagtcctgtccatcagagcccttcggcaccacccacctcgaaacggcc
aatcagatcacacggacagaggaggcaggaggcaaagaggagaaagaggaggaacaggag
ggagagatggaggaggagatggaagaggaggaagaggcaaacagtgatgaaaaagaggag
gaggaagacgagaaagatgcagaggtgacgtcaccatcgctgcacctgcagagccagatg
aagaggaagttggatcatggtccagacggtcggccgttcccttcagggaagaaacactgt
aaaggcaacggatacctcagtccttccagtctggttcaagccacgcccaccacatttggc
gacctgcgactggccaatgggcactcggctcagcggcggcgggtcacctcgggtccacct
ccttctggtctgcaggactggcttcacaccttccaggcgtggagtggtcctgagaggcta
ttggctctggacgagttgatcgacaggtgtgagaccagtcaggtgaaacacatgatgcag
gtcatcgagccccagttccagagagacttcatatccctgttgcccaaagagttagctctg
tatgtgctgaccttcctggctcccagagacctgctgcaggccgctcagacctgcagatac
tggaggatcctggctgaggacaacctgctgtggagggagaagtgccgcgaagaaggtata
tcagagtgtgtgtcatcccgtcgcaggaagtgtgcgaggccaggtgcggcggtcagtccg
tggaaatcggcctacatcagacaacaccgcatcgagaacaactggaggaagggggacaca
cgagaacccatggtgctgaaaggtcacgacgatcacgtgatcacctgtctgcagttcagc
ggtgacctgatcgtcagcggatcagacgacaacacactcaaagtctggtcggccatcacc
ggcaagtgtctgcgcacgttgnacggtcacactggcggagtgtggtgcagtcagatggcg
gtcgccacggtgatcagcggctccacggacaggacgctgcgtgtgtgggacgccgagagc
ggagagtgtgtccacacgctgtacggacacacgtccactgtgcgctgcatgcatctccac
ggcaaccgggtggtgtcgggctctcgggacacgacactgcgggtctgggacgtgtcgacg
ggtcgctgcgagcatgtgctgacgggccacgtggcggcggtgcgctgcgttcagtacgat
ggccgccgcgtggtgtcgggcggctacgactacatggtaaaggtgtgggaccccgagacg
gaggcgtgtctgcacacactgcagggacacaccaacagagtgtactcgctacagtttgat
ggcgtatttgtggtcagcggttcattggacacttcaatcagagtctgggacgcagagaca
ggtggatgtgtccacacgttgaccggccaccaatcgctgaccagtggcatggagctgcga
gacaacatcctggtctcggggaacgccgactccacggtccgagtgtgggacatccggacg
ggacagtgtctccacacactgcaagggcctaacaagcaccagtcggcggtgacgtgcctg
cagttctgccgaggtctggtcctgtccagctccgacgatgggacagtcaaactgtgggac
ctgaggactggagcctggctgagggatgtggtggcgcttcagagcagaggatcaggtggt
gtggtgtggcgaatcagagcctctgacactcggctggtgtgcgctgctggcagtaggaat
gggacggaggaaaccaaactgctggtgttggactttgacctggatgacaagaagaaagag
acagagtaa
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