Lates calcarifer (barramundi perch): 108887258
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Entry
108887258 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1
KO
K16857
thrombospondin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04115
p53 signaling pathway
lcf04145
Phagocytosis
lcf04148
Efferocytosis
lcf04350
TGF-beta signaling pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04518
Integrin signaling
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108887258
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108887258
04518 Integrin signaling
108887258
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
108887258
04148 Efferocytosis
108887258
09143 Cell growth and death
04115 p53 signaling pathway
108887258
09144 Cellular community - eukaryotes
04510 Focal adhesion
108887258
09142 Cell motility
04820 Cytoskeleton in muscle cells
108887258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108887258
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108887258
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Opsonins
108887258
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108887258
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
cEGF
TSP1_ADAMTS
Laminin_G_3
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
108887258
NCBI-ProteinID:
XP_018538068
LinkDB
All DBs
Position
LG7_1:6124290..6136512
Genome browser
AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWTCESARVAESRDDNSVYDLFELIQVPKKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPENSFRDLIDSIHAERGFLLLLNFKQSRRTRGSLLTVEKKDGSGPVLEIVS
NGKANTLDIFFSTENKQQLFSIEDADLATGHWKNITLFVQEDRALLYAGCEEVNSAELDA
PIQSILTQETPASAQLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSVTSDTM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTD
ENKLIKNRIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGSWSHWSPWSSCSVTCGSGVITHIRLCNSPTPQLGGKDCEGEGRQT
KKCQMPECPINGNWGPWSPWDTCSLTCGGGRQTRKRLCNDPAPNYGGKDCVGEAKDIQLC
NKKPCPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDIDECKEVPNACFE
FNGVHRCENTEPGYNCLPCPPRYSGPQPYGRGVEQAAANKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFIYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFGISETDFRQFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSLYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacagggatattcttgctattgatgctttggacctgcgagagcgcgcgagtc
gcagagagccgagacgacaatagcgtgtatgacttgtttgagctcatccaagtccccaag
aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtccccgagaactcctttagggaccttatcgattcc
atccacgccgagaggggattcctcctgctgctgaacttcaagcagtcaaggcggaccagg
ggaagcctcctgaccgtggagaagaaggacggctccggacctgtgttggagatcgtctcc
aacggcaaggcgaacaccttggacatatttttctctaccgagaacaagcagcagctgttt
tccatcgaagatgcggatctggccacgggccactggaagaatatcaccttgttcgtgcag
gaggaccgggcgctgctgtacgcgggatgcgaggaggtgaacagcgcggagctggatgcg
cccatccagagcatcctgacgcaagagaccccggccagcgcgcagctcaggattggcaag
ggagcagtgaaggacaggttcatgggggtcctgcaaaacgtgcggtttgtgtttggaaca
acactggatgcaatcctccgcaacaaaggatgccaaagctctgtgacatctgacaccatg
atcctggagaacctcaacggttcctcagccatcagaacggagtacactggacataagact
aaagacctgcagatggtctgtggcttctcctgcgaggacctggtcagcatgtttaaggag
ctgaagggcctcggtgttgtggtcaaggagctgtccaatgaactccgacagctgacggat
gagaacaagctgatcaaaaaccgcataggcatccacagtggcgtctgcatccacaacggc
atcgtgcacaaaaacagagatgagtggaccgtcgacgactgcaccgagtgcacttgccag
aactctgctactgtgtgccgcaagatctcctgccccctgatcccctgtgcgaatgcgact
gttcctgatggagagtgctgcccccgctgtggaacaccgagtgactatgcagaggacggc
tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag
cgtgggcgctcctgcgaccgtatcaataacaactgtgagggcacctctgtgcaaacccgc
gactgctacctccaggagtgcgacaaacgcttcaaacaggacggcagctggagtcattgg
tcaccctggtcttcctgctccgtcacctgtggttctggtgtcatcacccatatccgcctc
tgcaactcccccaccccccagctcggaggcaaggactgcgagggagagggccgacaaact
aagaagtgtcagatgcctgagtgccccatcaatggcaactggggaccctggtcaccatgg
gatacctgctctctcacctgcggaggtggtcgtcagactcgtaaacgtctgtgcaatgac
cctgcaccaaactacggtggcaaagattgtgttggtgaagcaaaagacatccagttgtgt
aacaagaaaccatgccccatcgatgggtgtttgtccaacccctgctttgctggagccaag
tgtaccagcttccctgatggttcatggaagtgtggaaagtgtccagctggctacaccggc
aatggtatcaagtgtaaagatatcgatgagtgtaaggaggtcccaaatgcttgctttgag
tttaacggtgtgcaccgctgtgagaacaccgaacctggctacaactgtctgccctgccct
cctcgctactcaggaccccagccctatggcagaggtgtggagcaggctgccgctaataaa
caggtgtgcacaccccgtaatccctgcctcgatggaagccacgactgcaacaaaaatgcc
cgttgcaactacctcggacacttcgctgatcccatgtaccgctgtgagtgcaagcccggt
tacgctggcaacggccatatctgtggagaggacacagatctggatggatggccaaatgct
gacttggtttgtgtggagaatgccacctaccactgcaaaaaggacaactgccccaacctc
cctaattctgggcaggaagattacgataaggacggcattggagatgcttgtgacaatgat
gatgacaacgatggcattcctgacgatagggacaactgtccattcatctataaccccagg
cagtatgactatgaccgtgatgatgtgggagaccgctgtgacaactgcccctataacagt
aacccagaccagacagacacagacaacaatggagagggagatgcctgtgctgtggacatt
gatggagatggtatcctaaatgagaaggacaactgcccctatgtgtacaatgttgaccag
agagacacagatctggatggagttggagacatgtgcgataactgccctctggaacataat
cctgatcaggtggattcagacgatgaccgtgtgggagacaagtgtgacagtaaccaggat
attgatgaggatggacatcagaacaacctggacaattgcccatacatccccaatgccaac
caggctgaccacgacaaagacggcaagggagatgcctgtgaccatgatgatgacaatgat
ggcatccctgatgacaaagacaactgcagactggccttcaaccctgaccaactggactct
gacggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaatgtgcctgac
atctatgacgtgtgtcctgagaactttggaattagtgagactgacttccggcagttccag
atggttcctttggatcccaaaggcacctcccagattgatcctaactgggttgtccgccat
cagggcaaagagctggttcagactgtcaactgcgaccctggcattgctgttggctaccat
gagttcaatgcagtggacttcagtgggactttcttcatcaacacagagagagatgatgat
tatgccggctttgtttttggctaccagtccagttccaggttctatgtggtgatgtggaag
cagattacacagacctactggtcaaataaacccaccaaggcccaggggtactctggtctg
tccattaaagtggtaaactccaccaccggcccaggagagcacctcagaaacgccctctgg
cacactgggaacacccctggacaggtccgtactctctggcacgaccctaagaatgttgga
tggaaagacttcactgcctacagatggcatctgatccacagaccgagaacaggacatatc
agagttgtgatgtatgagggcaaaaagatcatggcagattctggtagcctctatgacaag
acatatgcaggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca
gacctcaagtatgaatgcagagatgcataa
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