Lates calcarifer (barramundi perch): 108887802
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Entry
108887802 CDS
T04895
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04140
Autophagy - animal
lcf04144
Endocytosis
lcf04620
Toll-like receptor signaling pathway
lcf04621
NOD-like receptor signaling pathway
lcf04622
RIG-I-like receptor signaling pathway
lcf05132
Salmonella infection
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108887802
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108887802
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108887802
04140 Autophagy - animal
108887802
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108887802
04621 NOD-like receptor signaling pathway
108887802
04622 RIG-I-like receptor signaling pathway
108887802
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108887802
09171 Infectious disease: bacterial
05132 Salmonella infection
108887802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108887802
04121 Ubiquitin system [BR:
lcf04121
]
108887802
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108887802
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108887802
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
108887802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
TRAF6_Z2
zf-C3HC4_4
zf-RING_5
U-box
RING_XB3-XBAT31
TRAF3_RING
zf-RING_11
zf-RING_6
zf-TRAF_2
BLI1
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
108887802
NCBI-ProteinID:
XP_018538872
UniProt:
A0A4W6ENJ0
LinkDB
All DBs
Position
LG2:complement(10251530..10257903)
Genome browser
AA seq
609 aa
AA seq
DB search
MDKKKKCNWLSLMTFGEKTGNSVETKSPRNFLVKGAYIMACFESNKGSLEEDSYEGAVGG
ELSGCALAMLEKERESLLSPSESPGTFICSTSSSLQAAAPLQGYDVEFDPPLESKYECPI
CLMALRNAVQTPCGHRFCKNCIEKSIRDTGQKCPVDNEMLSEDQLFPDNFAKREILSLTV
RCPNSGCAEKMELRHLENHLAHCQFATVPCPQCQQSVRKSHLGEHTTVECQRRPVSCPDC
VACFVYEERERHEQQCPFASVKCQYCEMDLIRDQMESHCDTDCPKAPIACNFSTFGCKER
MQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSLWALGPSVSSDDQGAAASVSASS
GPRGAVSCSSNCAPAQPSEEMQRLREMDGRLVKQDHQLRELIILKETQAGQLAELRRRVS
VLEDTVKELEAQQCRGIFIWRLKGFSAHQRNQEVGLPVVEHSPGFYTGSPGYKLCLRLHL
QTPSAQRCSNYISLFVHTMQGSFDEQLTWPFQGTIRLAILDQGPEGQHHVEVMETKPDLQ
AFQKPTIQRNPKGFGYVTFMHLNQLSQRAYVKDDTLLIRCDVTPRFDNMPHREGPAVQPR
GPEASVSRD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaagaaaaaatgcaactggttatctttgatgacgtttggagaaaaaacagga
aattctgtagaaacgaaaagtccgagaaattttctcgtcaaaggtgcgtatataatggct
tgctttgaaagcaataaagggagcttggaggaggacagctatgaaggagctgttggtgga
gagctgtccggctgtgccttggcaatgctggaaaaggagcgggaatcccttctcagccca
tcagagagccctggcaccttcatttgcagcacatcctccagtcttcaggccgctgctccc
ctccagggctacgatgtggaatttgacccacccctagagagtaaatatgagtgccccatc
tgcctcatggctttgaggaatgccgttcaaacaccctgtggtcaccgtttctgcaagaac
tgcattgagaaatccattcgtgatacaggacagaaatgccctgtggacaatgaaatgctg
tcagaagaccagctgttccctgataactttgccaaacgggagattttgtcactaactgtt
cgctgtccaaactctggttgtgctgagaaaatggagctacgacatttagagaatcatttg
gcacattgtcagtttgccaccgtgccttgcccacaatgccaacagtctgtgagaaaaagc
cacctaggggagcacacaactgttgagtgccaaaggagacctgtgtcatgtccagactgt
gtagcatgctttgtttatgaggagagagagcgtcatgagcagcagtgtccctttgccagc
gtgaagtgccagtactgtgagatggatctcatcagagaccagatggaatctcattgtgat
acagattgcccaaaagcacccatcgcctgtaactttagcacctttggatgtaaagagagg
atgcagcgtcataacctggctcagcacatgcaggagttcacacaaatgcatatgcgctac
atggctgagttcttacgtggccttagccttaatggcaccacacccaaatccctgtgggca
cttgggccttctgtttcctctgacgatcaaggagctgcagcatcagtgtcagcttctagt
gggcccaggggagctgttagctgcagcagcaactgtgctccagctcagcctagtgaagag
atgcagaggctcagggagatggatggacgactggtgaagcaggatcaccagctacgtgag
ctcatcatcttaaaagaaacacaggcaggccagcttgcagagctcagacgtagggtgtcg
gtgctggaggacactgtgaaggaactggaggcccagcagtgccgtggtatcttcatctgg
cgcctcaaaggtttctctgcccaccagcggaaccaagaagtgggcctgccagtggttgag
cacagccccggcttctacacaggcagtccaggctacaagctgtgcctgcgtttacacctg
cagacccccagtgcccagcgctgctccaactacatctccctctttgtccacaccatgcaa
ggatcttttgatgagcagcttacgtggccgtttcaaggcaccatccggcttgccatccta
gaccagggtcccgaaggacagcaccacgtggaagtgatggaaactaagccagacctgcaa
gcctttcagaagcccaccattcagcgcaaccccaaaggattcggctacgttaccttcatg
cacctgaatcagctgagtcagagagcctatgttaaagatgacaccctacttatccgctgt
gatgtgacaccacgttttgacaatatgcctcaccgtgagggaccagcagtgcagccaagg
gggcccgaggcatcagtttcaagggactga
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