Lates calcarifer (barramundi perch): 108887902
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Entry
108887902 CDS
T04895
Name
(RefSeq) fibrillin-1
KO
K06825
fibrillin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04350
TGF-beta signaling pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108887902
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108887902
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108887902
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108887902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
EGF
hEGF
FXa_inhibition
TB
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
FBN_EGF_st1
Motif
Other DBs
NCBI-GeneID:
108887902
NCBI-ProteinID:
XP_018539098
LinkDB
All DBs
Position
LG2:complement(7541723..7600248)
Genome browser
AA seq
2914 aa
AA seq
DB search
MPDSKCGGRLLQLAVALVALLSLCAEFGDAAAELVDAGDSELVTKQTDSRASRAKRRGGT
DVLRGPNVCGSRNNAYCCPGWKTLTGGNQCIVPICRSSCGDGFCSRPNMCTCPNGQIAPS
CGSKSVQHCNIRCMNGGTCAEDHCLCQKGYVGNHCGQPVCENGCLNGGRCVAPNRCVCTY
GFTGAQCERDYRTGPCFASVNNQMCQGQLTGIVCTKTLCCATVGRAWGHPCEMCPAQPHP
CRRGFIPNHRTGACQDVDECQAIPGICQGGNCINTVGSFECKCPAGHKFNEVSQKCEDLD
ECSNIPGLCSVGECSNTVGSYFCKCPQGYHTSLDGSRCIDARGGYCYASVLNGRCANQNS
QLMTKIQCCCDSGRCWSDGSTPEICPIRATEEHQKLCFQLPDGNGGVLIPGHVPGGPDLP
GIYPLPYPGQTPGQVPGQVPGVIPGQIPIQVPGLVPGQVPGQIPGQIPIHIPGHIQPPPP
GPVIIQTQNITNMCQAYRNLCLNGRCIPMPGIGYRCECNMGFRLDGRGECIDDDECERSP
CAHGECVNTPGSYICQCPAGFQTTSTRTECRDLDECVANGRICNNGRCVNTEGSFHCVCN
AGFEISADGKNCQDQDECLIRNMCLNGLCINEDGSFKCICKPGFLLDTSGRMCVDIDECE
TPGMCMNGHCVNTEGSFRCECMAGMAVGLDGRVCVDTHMRSSCYGGYKRGQCVRPLFGAV
TKSECCCASTEYAYGEPCQPCPPQSSAEFLALCPNGVGITGDGRDINECALDPDICQNGV
CENMLRTYKCTCNEGFEVDLTGKNCVDIDECLMNRLLCENGLCRNTPGSFTCQCPKGYRF
DPETDVCEDVNECDSSPCINGDCMNSQGSFVCLCSMGSSLDSSGLECIETTKSTCWLKMV
NNRCEVNINGATLKSHCCATLGEAWNSPCAKCEKDPICSKGFARVRGNVCEDVDECQVFP
GVCINGKCVNTPGSFFCQCPPGMTVDVSGRTCIDLRTEQCYLTHEDERCGAPIPGKHRVD
ACCCSVGVAWGPECDECPEKGTQEYAQLCPRGPGFSHRGDFINGRPFLKDINECRMINTL
CSNGRCRNTIGSFRCRCDNGYALDSDERNCTDIDECRISPDLCGQGRCVNTPGDFECECF
EGYESGFMMMKNCMDIDECERNPLLCRGGDCVNTEGSFQCVCPEGHEIAPDGSACLDINE
CELSDRLCKNGQCVNMIGRYQCTCDTGYKSTENRLECVDIDECTIENGGCETFCTNSEGS
YECSCHSGYALMPDLRSCTDIDECEESPDICDGGQCTNTPGTYQCLCFDGFMSSEDMKTC
LDVDECELNPNICLSGNCENTKGSFICHCDLGYSVRKGTTGCTDINECEIGAHNCDRHAT
CTNTAGSFKCNCAPGWIGNGLKCTDLDECSNGTHMCNNNADCLNTMGSYRCVCKDGFSGD
GFYCSDSDECAENSNLCESGHCLNLPGGFRCECDMGFFPTPDGKACEDIDECTFSDICVN
GRCLNMPGLFRCECNIGYELDRSGGNCTDVNECADPTICINGMCVNIPGSYHCNCPADFE
LNPTRVGCVDTRSGSCFLDVRSRGDASESLVCSNEIGVGVSKASCCCSLGQGWGNPCESC
PSVNTTEYKTLCPGGEGFRPNPITVILEDINECQELPGLCQGGQCINTFGSFQCECSRGF
ALNTDTRVCEDVNECERPGICGPGQCYNTIGNYTCICPVDYMQVNGGNNCMDMRKSYCYR
NFYSDNGTCDGELTFNMTKKMCCCSYNIGRAWNKPCEQCPVPSTDEFAILCGSERPGYYI
DITTGRVIDIDECREIPGVCENGVCINMIGSFRCECPIGFIYNDKLLICEDIDECQNGPV
CQQNAACLNMPGSYRCECKPGYRFTPTGQCLDRNECIENPGICNPGQCIDTLGSYRCICP
NGFKTTRDQSMCVDVDECERQPCGNGTCKNTVGSYNCLCYPGFQNSHNSDCIDVDECATQ
RGLCRNGQCVNTVGTFLCICHDGYELSLDGRLCADINECAVHPGTCGAGTCLNLDGSYRC
ICPPGYYLHEETCEDIDECSQSPELCTFGTCSNTEGSFTCLCPEGFQVSASGLRCLDNRV
NYCYTKFDNGRCLAPKPQNTSKAACCCTGMPGQGWGDPCEICPSKGEDAYLILCPNEGYQ
RGDDDHPKDIDECINDPCINGQCINTDGSFRCECPMGYRLDISGVRCEDTNECDIGNPCG
NGTCTNVIGGFECACDDGFEPGPMMTCEDINECAQNPLLCAFRCVNVVGSYECKCPTGYV
LREDKRMCKDQNECEDGIDDCASRGMTCKNLIGTYMCICSPGYTRQPGGEGCMDLNECTA
KPGICKNGRCENTVGSYRCRCDQGFIANPTQTECIDNREGFCFTEVLTTLCQMTSSNRNM
VTKSECCCDGGRGWGTNCELCPLPGTTQYKRMCPLGPGYTTDGRDIDECRVMGNLCKNGQ
CINTLGSYSCTCKPGYTTDISSTLCVDVDECIQAPKPCNFICKNTEGGYLCSCPRGYILQ
EDGKSCKDLDECSTKQHNCQFLCVNTIGGFTCKCPPGFTQHHTACIDNNECATDPNLCGS
NGVCQNTPGSFNCECQRGFSLDPNAQTCEDMDECDGNHRCQHGCQNLVGGYRCSCPQGYL
QHYQWNQCVDENECLNSQICGGASCHNTLGSFRCLCPTGFNYEQTSGGCTDINECSTSQN
PCKFGCSNTDGGYLCGCPPGYFRAGQGHCVTGLGFTSGGPSGGQGGEVDDNSLSPEACYE
CKINGYPKKGRKRRSTNSTQEYPQEHMQLTEKVSLASVDVEDTLQLHLNISDLSSRDHIL
QFTPALSTLSDHVRYSIDYGNEQGYFKINQRDGVSYLHLSKKKALPPGAYYLQISSMPLY
KKKELAELEDRHDKDYLTGQLGDILKMRVQIILH
NT seq
8745 nt
NT seq
+upstream
nt +downstream
nt
atgccggacagtaagtgtggaggacggctgctgcagttggccgtggctctggtggccttg
ctgtcgctctgcgccgagtttggagacgctgctgcagagttggtagatgccggggacagc
gagctggtgaccaagcagaccgactccagagccagcagggctaagaggaggggagggacg
gacgtcctcagaggaccaaatgtgtgtggctcgaggaacaacgcctactgctgcccaggc
tggaaaactctgactggaggaaaccagtgcattgttccgatctgccggagttcatgtgga
gatggtttctgctccagacccaacatgtgcacctgtcccaacggccagattgccccatcc
tgtggatccaagtcagtccagcactgtaacattcgttgtatgaacgggggaacatgtgct
gaggaccactgcctgtgccagaaaggctacgtgggaaaccactgtgggcaaccggtttgt
gaaaatggctgtctcaatggaggaagatgtgtggctcccaacagatgtgtgtgcacctat
ggcttcaccggggctcagtgtgagagagactaccgcactgggccatgctttgcctctgtg
aataaccagatgtgtcaaggccagctcacaggcattgtgtgcacaaagactttgtgctgc
gccacagtgggacgggcgtggggtcacccctgtgagatgtgccctgcccaacctcacccc
tgccgaagagggttcataccaaaccaccgcactggggcgtgccaagacgtggatgagtgc
caggccatccctggcatctgtcaaggaggaaactgtatcaacacagtgggatcctttgaa
tgtaaatgccccgctgggcacaagttcaacgaggtctcacagaaatgtgaagatctggat
gagtgttcaaacattccaggtctctgcagtgtaggtgaatgctctaatactgttggcagc
tacttctgcaagtgtccccaggggtatcatacctctttggatggatccaggtgtatagat
gctcgcggtgggtactgctacgctagtgtgcttaacgggcgctgtgccaaccaaaactca
cagctcatgaccaaaattcagtgctgctgtgatagtggacgctgctggtccgatgggtcc
acccctgagatatgtcccattcgtgcaacagaagagcaccagaaactgtgcttccagctt
cctgatgggaacggtggggtactgatacctggtcatgtcccagggggccccgatctaccc
ggcatctacccacttccatatcctggtcagactcctgggcaagttcctggccaggtaccc
ggagtgattcctggtcaaattcccatccaggttccaggcctggtccctggccaagtaccg
ggtcagattccaggccaaattccaattcatattccgggacatatacagcctcctccgcca
ggtcctgtcattatccaaacccagaatatcaccaacatgtgccaggcctaccgcaacctc
tgcctgaatggcaggtgcatccccatgccaggcattggatatcgctgtgagtgcaacatg
gggttcaggttggatggaaggggagagtgcattgatgacgatgaatgtgagagaagcccc
tgtgcacatggggaatgtgtgaacacgcctgggtcttacatctgtcagtgtcctgctgga
ttccagaccacttcaaccaggactgagtgccgagatctggatgagtgtgtggccaacggt
cgtatctgcaacaatggccgctgtgtgaacactgagggcagcttccactgtgtgtgcaat
gctggatttgagatttcagcagatggcaaaaactgtcaagaccaggacgagtgtctgatc
aggaacatgtgtctcaatggattgtgtatcaatgaagacggcagcttcaaatgcatctgt
aaacctgggttcctgctcgacaccagtggacgcatgtgtgtagacattgatgagtgtgag
actccaggcatgtgtatgaacggacactgcgtcaacacggagggatctttccgctgtgag
tgtatggctgggatggcggtgggcctggatggacgggtctgtgtcgacacacatatgcgc
agttcttgttatggtggctacaagcgagggcagtgtgttaggcctttatttggagctgtg
accaagtctgagtgctgctgtgccagcacagagtacgcctacggagagccctgccagccc
tgcccaccacaaagctctgctgagttcctggccctgtgccccaatggtgttggcataacc
ggcgatggaagagatattaacgagtgtgccctcgaccctgacatctgccagaacggagtg
tgtgagaacatgctgaggacatacaaatgcacctgcaatgaaggctttgaggtcgacctg
acgggcaaaaactgtgttgatattgatgaatgtctgatgaacagactgctgtgtgaaaat
ggtctgtgtaggaatacaccaggcagtttcacctgtcagtgtcccaaaggttaccgcttt
gatcctgagacagacgtctgtgaagatgtgaatgagtgtgactctagcccctgtattaat
ggagactgcatgaacagccaggggtcctttgtgtgtttgtgttcaatgggcagttcactg
gacagctctggactggaatgtatagagactactaagagcacctgctggctgaagatggtc
aataatcgctgtgaggtcaacatcaacggggctacactgaagtcccactgctgcgccaca
ctgggagaggcctggaacagcccgtgtgccaaatgtgaaaaagatccaatttgtagtaaa
ggctttgctagagttagaggaaacgtctgtgaagatgtggatgaatgtcaagtgtttccc
ggagtgtgtatcaatggcaagtgcgtcaacacaccgggttcctttttctgtcagtgtcct
cccggaatgactgttgatgtcagcggcaggacgtgcattgacctgcgtacagagcagtgc
tacctcacccatgaggatgagcgctgtggggctcctatcccagggaagcaccgtgtggat
gcctgctgctgctcggttggcgtggcctggggcccggaatgcgacgaatgtccggagaag
ggcactcaagaatatgcacagctctgtcctcggggcccaggtttctcgcacaggggtgac
ttcatcaacggcaggcctttcctcaaagatataaatgagtgcaggatgataaacaccctc
tgctcaaatgggaggtgcagaaacaccatcggcagcttccggtgtcgctgtgacaacggc
tacgctttggactctgatgagagaaattgcactgacattgatgagtgccgcatctctcct
gacctgtgcggacagggcaggtgcgtcaacacgccaggagattttgaatgcgagtgcttt
gagggctacgagagcggcttcatgatgatgaaaaactgcatggacatcgatgagtgtgag
aggaaccctctgctgtgccgtggcggcgactgtgtaaacacagagggcagcttccagtgc
gtgtgccccgagggacacgagatcgcacccgatgggtcggcctgtctagatatcaatgaa
tgtgagttgagcgacaggctgtgcaagaacggccagtgtgtcaatatgatcggccgctac
cagtgtacctgcgacacaggatacaaatctactgagaacagactggagtgtgttgacatt
gacgagtgtaccattgagaatggtggctgtgagaccttctgcaccaactccgagggtagt
tatgaatgcagctgccacagtggatacgccctgatgcctgatctgagaagctgcactgac
attgatgagtgtgaggagagcccagacatctgcgatggaggccagtgtaccaacacccca
gggacgtaccagtgcctatgctttgacggcttcatgtcatctgaggatatgaagacatgc
ctggatgttgatgagtgtgagttgaacccaaacatctgtctgagcgggaactgtgagaac
actaagggatccttcatctgccactgcgacctgggatactctgtgcgcaaggggaccaca
ggctgcacagatatcaatgagtgtgagatcggagctcataactgcgacagacatgctacc
tgcaccaacacagccggcagcttcaagtgcaactgcgctccagggtggattggcaatggc
ctcaaatgcacagacctggatgagtgctccaatgggacacacatgtgcaacaacaatgct
gactgtctcaacaccatgggctcatatcgctgtgtgtgcaaggatggattctctggagat
ggattctactgctcagacagcgatgagtgtgcagagaacagcaacctgtgtgagagtggc
cactgtttgaacctgccaggaggcttccgctgtgaatgtgacatgggtttcttccctact
cctgatggcaaagcctgcgaggacatagacgaatgtaccttttctgacatctgtgtcaat
ggacgctgcctgaatatgccaggactttttagatgtgaatgtaacattggttatgagctg
gacaggagtggaggcaactgcacagatgtcaatgaatgcgctgacccaaccatttgtatt
aatggaatgtgtgtcaacatccctggaagttaccactgtaactgcccggcagactttgaa
ctcaaccccactcgggtgggctgtgtagatactcgctctggaagctgcttcctggatgtt
cgttcccgaggagatgcatctgagagcctggtctgctccaatgagatcggagttggggtt
tcaaaggcatcctgctgttgctccctcggccaaggctggggaaatccatgtgaatcatgc
ccctctgtcaacacaactgagtacaagacgctgtgtcccggaggagaaggcttcagacca
aacccaatcactgtcatcttggaagatatcaatgaatgtcaggagttgccaggcttgtgc
cagggaggacagtgcatcaacacctttggcagcttccagtgtgaatgttcaagaggcttt
gccctcaacacagacaccagagtctgtgaagatgtcaatgagtgtgaacgaccaggtatc
tgtggcccaggccagtgctacaacactattgggaactacacctgcatctgtcctgtggac
tacatgcaggtcaatggaggaaacaactgcatggacatgaggaagagctactgctacaga
aacttttactctgacaacgggacgtgtgatggagagctgaccttcaacatgaccaaaaag
atgtgctgctgctcctacaacatcggccgtgcatggaacaaaccctgtgaacagtgtcct
gtgcccagcactgatgagtttgcaatcctgtgcggcagtgagagaccaggatattacatt
gacatcaccactggacgggtcattgatattgatgagtgcagggaaatcccaggagtgtgt
gagaacggagtctgcatcaacatgatcggcagcttcaggtgtgagtgcccaatcggtttc
atttacaacgacaagctgctgatttgcgaagatattgatgaatgtcagaatggacccgtg
tgccagcagaatgcagcctgtctgaacatgccaggaagctaccgctgcgagtgtaaacct
ggatatcgcttcactcccactggacaatgtctagaccgaaatgaatgtattgagaaccct
ggtatatgcaatcctggtcagtgcattgacacgctgggtagctatcgctgcatctgcccc
aatggcttcaagacaacgcgggaccagtcaatgtgtgtcgatgtggacgagtgtgagaga
caaccctgcggcaatgggacctgtaagaacacagtgggctcgtacaactgtctctgctac
cccggctttcagaactctcacaacagtgactgcatagatgtcgatgagtgtgcaacgcag
agaggcttgtgtcgaaatgggcagtgtgtgaacacggtgggcaccttcctctgcatatgc
catgatggctatgagctctctttagatggcagactgtgtgcagacatcaatgaatgtgca
gtgcatccaggcacatgtggtgcaggaacttgtctgaatctggatggctcttacaggtgt
atctgcccacctggctactatctccatgaggaaacctgtgaagatattgatgagtgctcc
cagtcacctgagctctgtacatttggaacctgctccaacactgaaggaagcttcacctgc
ttgtgtcctgaaggcttccaggtctctgcctccggactcagatgtttagataaccgtgtg
aactactgctacaccaagtttgataatgggcgctgcctggctccaaagcctcagaacacc
tccaaggcagcgtgctgctgcactgggatgccaggtcaaggctggggagacccctgtgaa
atctgccccagcaaaggagaggatgcatatcttattctctgtcccaatgagggatatcaa
cggggtgacgatgaccacccgaaagatattgatgaatgcatcaatgacccttgcattaac
ggccagtgcatcaacacagacggctctttccgctgtgaatgtcccatgggataccgcctg
gacataagtggagtcagatgtgaagacactaatgagtgtgacattggcaatccttgcgga
aacggcacatgcactaatgtcattggcgggtttgagtgcgcgtgcgatgacggctttgag
cctggtccgatgatgacctgtgaagacatcaatgagtgtgcacagaatcctctactgtgc
gccttccgctgtgtcaacgtggtgggttcgtacgagtgcaaatgtcccacgggctacgtt
ctgcgcgaggacaagaggatgtgtaaagatcagaatgagtgtgaagatggcatagatgac
tgtgccagcagaggcatgacctgcaagaacctgattggcacatacatgtgtatctgttcc
cctggatacacacggcagcctggtggagagggatgcatggatttgaatgagtgtacagcc
aaaccaggtatctgtaagaacggccgttgtgagaacacagtaggaagttaccgctgcaga
tgtgaccaaggtttcatcgctaaccccacacagactgaatgtattgataaccgtgaaggg
ttctgtttcactgaggttctgaccactctgtgtcagatgacttctagtaacaggaacatg
gtgaccaagtcagagtgctgctgtgatggaggcagaggctggggcacaaactgtgagctc
tgtcccttgccggggaccacccagtataagaggatgtgtcctctgggacctgggtacacc
actgatggcagagatattgatgagtgtcgtgtcatggggaacttgtgcaagaatggtcag
tgtatcaacactttgggctcctacagctgcacctgcaaacctggctacactactgatatt
agcagcacgctgtgtgtggatgtggatgagtgcatacaggcaccaaagccttgtaacttc
atctgtaagaacacagagggaggctacctctgttcctgccctcgtggatacatcctacaa
gaagatggaaagagctgcaaagatctggatgagtgttcaaccaaacagcacaactgccag
ttcttatgtgttaacaccattggtgggttcacctgcaaatgtcctcctggcttcacccag
catcatactgcctgcattgacaacaatgaatgtgcaacagaccccaatctgtgcggctcc
aacggtgtctgccagaacactccagggagcttcaactgcgagtgccagagaggattctca
ttagatcccaatgcgcaaacctgtgaagatatggatgagtgtgatggtaaccacaggtgt
cagcatggctgtcagaacttagttggtggatacaggtgcagctgtccacaaggctacttg
cagcactaccagtggaaccagtgtgtggatgagaacgagtgtttgaacagccaaatctgc
gggggagcgtcatgccacaacacccttgggagcttccgctgtctctgccccactggcttc
aactacgagcagaccagcggaggctgcacagacatcaacgagtgctccaccagccagaac
ccctgcaagttcggctgctctaacacagacgggggctacctctgtggatgtccacccgga
tacttccgtgcaggacaagggcactgtgtcactggtctgggctttactagtggtggcccc
agtggtggacaaggaggtgaagtggatgataattctctgtctcctgaagcctgctacgaa
tgtaagatcaacggctatcccaagaagggacgcaaacgtcgcagcaccaactcaacacaa
gaatatcctcaggagcacatgcagctgactgagaaggtcagtctggccagtgttgatgtt
gaggacaccctgcagctccacctgaacatcagcgacctgagtagtcgtgaccacatcctt
cagttcaccccagccttatccaccctcagcgaccacgtgcgctacagcatcgactacggg
aacgaacaaggctacttcaagatcaaccagagagatggcgtcagctacctgcatctgagc
aagaagaaggccctccccccaggggcgtactaccttcagatcagcagcatgcccctctac
aagaagaaggagttggctgagctggaggaccgacatgataaagactacctcacaggacag
ctgggagacatactgaagatgagggtgcagatcatcctccattaa
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integrated database retrieval system