KEGG   Lates calcarifer (barramundi perch): 108889265
Entry
108889265         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic protease-activating factor 1
  KO
K02084  apoptotic protease-activating factor
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04115  p53 signaling pathway
lcf04210  Apoptosis
lcf05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    108889265
   04115 p53 signaling pathway
    108889265
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108889265
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 APAF1_C WD40_MABP1-WDR62_2nd NB-ARC WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th CARD Beta-prop_WDR75_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_EIPR1 RMC1_N Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Ge1_WD40 eIF2A Beta-prop_Vps41 PEP5_VPS11_N CARD_2 WD40_like Beta-prop_VPS8 WD40_RFWD3 Beta-prop_WDR75_2nd AAA_16 Beta-prop_SPT8 WDR54 Nucleoporin_N AAA_22 nSTAND1 NACHT
Other DBs
NCBI-GeneID: 108889265
NCBI-ProteinID: XP_050933563
UniProt: A0AAJ8BL16
LinkDB
Position
LG18:8261281..8299616
AA seq 1297 aa
MTMEEGARSCLLRFRHRLEQDIKPSYLMDHMISDGVINVDEEERIRTQPTRKDQAVALLE
LLLRKDNRAYISFYNALVKETYDDLANLLYDDLPQISANAHKSSSDGWTPHVQMVLSEGG
VPQRPVVFVSRPELLNRVRERLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRHQGIIEECF
PGGVHWLSIGQLDKPDLLVKIQSLCFRLEQSLDSQSLHRPPNSLDEAKERLRFLMLRRYP
RSLLILDDIWDSTVLKVFDIQCRILLTTRNRSLTDSVSGAKYEVEVASGLDENKGLEILA
LYTKTNPQGLPEEARSIVRECKGSPLVVSLIGALLKEKPNRWRYYLCQLQQKQFKRIRKS
SSYDYDALDQAMAASIEVLPDEHQELYKDLTVLEKDIKIPAKVLSILWDLEPEEVEDILE
EFVNKSLLFVDSHNKPYLYYLHDLQLDFLVEQNRTQLEVDLHTKVVRQYQQHYRDDPPTS
GDEECLYWIRFLTYHMARANLSQELYSLMFSLDWVSIKAQIMGPAHLINDYVEYGPILDK
ENSEVRSQFQEFLSLNGHQLEQRPFPDVVQLALSQPPTSEVYRQALLQAQDRASKGKLYV
DWLNKSSVESLSRLVIHPHQGSIYSACFSQDGAKIATCGASKTLKVFKSTSGEKLTEIQA
HDDEVLCCAFSPDDRLLATCSSDRKVKVWNVERAMLLRVFAEEHEEQVNHCQFTNTRRQL
LLATCSNDKFLNVKVWNLNRPSSQNTMFGHFEPVNHCCFSPDDTYVSTSSNDGTVKLFQV
SSANEWKTINVSSMFTESDEEVLVKCSTWTADGKRIICAARNAVLVFDVETSDMLLEIRT
SRLSMVQYCHACPTSNLLAIAFSNYAVELWDLEANKKMADCSGHLSWVQRVQFSPDGSQL
LSCSDDQTVRLWETTKVHTSSAIALKRDSDVLFNDEEIIVSAADNCNRLQVRDGMTGSVL
FQSEEMSSRIRCTCMCRQPSVVALGQENGTVQAADRLTASQVLRAVGCRIRRLFTSYRGL
VLAVGLSTGSVQVLEVPSGKLLATLLGHTKTVLHCQFSQNGQTLITSSEDTTIRVWSWQS
GEGRVLKGHKEQVRCFSLLSHSPARLLSWSFDGTVKVWDVESGEKLQDIEAHRGAILSCH
VSPDGCFFATTSADKTAKLWHCESWQCVHTLSGHQDCVRSCRFSWDSRRLATGDDNGEIR
LWSVKEGALLKICSRDGKDGMDSLHGGWVTDLHFSSDNSLLVSTGGYIKWWDVEKGKALQ
TFYPTGSALKKIHVSCDFSTFVTIDNIGILYILQRVV
NT seq 3894 nt   +upstreamnt  +downstreamnt
atgacaatggaggaaggggcacggagctgtctgctgcgctttcgccacagactggaacaa
gacatcaagccctcatacctgatggatcacatgatcagtgatggtgtgataaatgtggat
gaggaggagaggatcaggactcagccaacgaggaaggatcaggctgtggctctgctggaa
ctgctgctcaggaaagacaaccgtgcctacatctccttttacaacgccctggttaaggag
acatatgatgatttggccaacctgctttatgacgacctgccgcagatttcagcaaacgcc
cataagagttcctctgatggctggacacctcatgtccagatggtgctcagtgagggtggt
gtaccacagaggcctgtggtgtttgtcagccgaccagagcttttgaaccgggtcagagag
agactctaccggttgcagaaggagcctggctgggtcaccgtcttcgggatggctggttca
ggcaaatctgtcctggctgcagaggctgtcaggcaccagggaatcatcgaagagtgcttt
cctggaggcgttcactggttgtccatcggccagctggacaaaccagacctgctggtgaag
atccagtcactgtgcttccgtctggaacagagcctggattcccagtcactccaccggccc
cccaactctctagatgaagccaaggagcgattgcgcttcctcatgctgcgcagatatccg
agatctctgctgattctagatgacatctgggacagtacagtgctgaaggtgtttgatatc
cagtgtcggatacttctgaccaccagaaatagaagccttactgattcagttagtggtgct
aaatatgaggtggaagtggccagtggtctggatgaaaacaaagggctggagatcctcgct
ctgtacactaaaactaatccccaaggactacccgaggaggctcgcagcattgtcagagaa
tgtaaaggctcccctctggtggtgtccttgatcggggctctgctcaaagagaaacccaac
cgctggcgttactacctctgccagctgcagcagaagcagttcaagcgtatacggaagtca
tcgtcttatgactatgacgccctggaccaggccatggctgcgagcattgaagtcctgcct
gatgaacatcaagagctctataaggacctcactgtgctggagaaggacattaaaatcccc
gctaaggtgctgtctattctgtgggatctggagccggaggaggtggaggacatcctcgag
gagtttgtcaacaaatctctgctttttgtggacagtcataataaaccatacctgtattac
ctccatgacctccagctggacttcttggtggagcagaaccgcacccagcttgaggtggac
ctccacacgaaagtggtgcgtcagtatcagcagcactacagagatgatcctcccacctcg
ggagatgaagaatgtctttactggatcagatttttgacctaccacatggccagagccaac
ctttcccaggaactgtactccctcatgttttctctggattgggtcagcatcaaggcccag
ataatgggtccagcccacctcatcaatgactatgtggagtatggaccaattctggataaa
gagaacagtgaagtgcgcagtcagttccaggagtttctgtctctgaacggccaccagctg
gagcagcgtcctttccctgacgtggtgcagcttgctctgtctcagccacccacctccgag
gtgtacagacaagctctgctgcaggcgcaagaccgggccagtaaagggaaactctacgtc
gactggctgaataagagcagtgtagagagtctgtcccgcctggtgatccacccccaccag
ggctccatctactctgcctgcttctcccaagatggagccaagatcgctacttgtggagcc
agcaagacgctcaaggtgtttaaaagcacatcaggtgagaagctcaccgagatccaggcc
catgacgatgaggtgctctgctgtgccttctcccctgacgaccgtctcttagcaacctgc
tctagcgacaggaaagtaaaggtgtggaatgtggagcgagccatgctgctgagggtcttt
gcagaggagcatgaagagcaggtcaaccactgtcagtttacaaacaccagacgacaactc
ctactggccacctgctccaacgacaagttcttgaacgtcaaggtgtggaacctcaacagg
ccatcctctcagaacaccatgtttggccactttgagccagtcaaccactgttgtttctcc
cctgacgacacctatgtgtccacttcttccaacgatggcactgttaagctatttcaggtg
tcatctgccaatgagtggaagacgatcaacgtgagcagcatgtttactgagagtgatgaa
gaggtccttgtcaagtgtagcacctggactgctgacggcaaacgcatcatatgtgctgcc
aggaacgctgttttggtgtttgatgtggagacgtcggacatgttgctggagatcagaacc
agtcgtctgagcatggtgcaatactgtcacgcctgtcctaccagtaacctgctggccatc
gccttttcaaactatgctgtcgagctgtgggacctggaggccaataaaaagatggctgac
tgcagtggacacctgagttgggttcagcgcgttcagttctctcctgacggctcacagctt
ctctcctgctctgacgaccagactgtcaggttatgggagactacgaaggttcatacctcc
tctgccattgccttgaagagagactctgatgttctcttcaatgatgaagaaatcattgta
tcggctgcagacaactgcaacagactgcaggtgcgtgatggcatgacgggatcagtgctg
tttcagtcagaagagatgtcgtccaggatccgatgtacctgtatgtgcaggcagccctct
gtggtggctctgggccaagagaatggaactgtgcaggcagcagacagactgacagctagt
caggtactgagggcggttggctgcaggatccgacgactgtttacctcctacaggggtttg
gtgctggctgtagggctaagtacaggcagtgtccaggtgttggaggtgccctctgggaag
cttctggccactctgctaggacataccaagacggtgctgcactgccagttcagccagaac
ggccaaaccctcatcacatcctccgaggacaccactattagggtgtggagctggcagtct
ggggagggtagagtactgaagggtcacaaggaacaggtcaggtgcttctctctgctctcc
cactcaccagcaagactgctgtcctggtccttcgatggtactgtcaaggtgtgggacgta
gaaagtggagagaagctacaggacatcgaggcacatcggggagccatcctttcctgtcat
gtctcaccagacggatgcttcttcgccaccacctctgctgacaagactgctaagttgtgg
cactgtgagtcctggcagtgtgtccacacactgagcggccaccaagactgtgtccgaagc
tgccgattctcctgggacagccgacgcctcgcaaccggagatgacaacggagagatccgg
ctctggagtgtcaaggaaggtgctctactgaagatttgttcgcgggacggtaaagatggc
atggactcactccacggaggctgggtgactgacctgcacttctcctcagacaactctctt
ctggtctcaactggcggttatatcaagtggtgggatgtagagaaaggcaaggccctgcag
accttctatccaacggggagcgctttgaagaaaatccacgtgtcgtgcgacttctccacc
tttgtcaccatcgacaacattggcatcctctacatcctccagagggtggtgtga

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