Lates calcarifer (barramundi perch): 108889295
Help
Entry
108889295 CDS
T04895
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1 isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108889295 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108889295 (tdg.1)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
108889295 (tdg.1)
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
108889295 (tdg.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
108889295
NCBI-ProteinID:
XP_018541194
UniProt:
A0A4W6FYV5
LinkDB
All DBs
Position
LG10:complement(4793644..4798813)
Genome browser
AA seq
451 aa
AA seq
DB search
MEEKLNGSLPVVSPEYLQQWVQSTQQFHALQAQYSGINMNHQYLYPERKTGESAMAHMAN
PDPMMDQQEPANLAKPAAKKRGRPAQPKEPKPPKPPKIPKAPKPPKDPNAPKAKPGPKPK
KATEAQADGKQEKIDETFKKVKRKIDRFKGMSEEEVMKKTLPDLLEYNLDYVIIGINPGL
MAAYIGRWFPGPGNHFWKCLFLSGFTEEQLNHMHDTTLPGKYKMGFTNMVARATPGSKDL
SSKELREGGKILVEKLKKYKPLIAVFNGKCIYEMFCRELFGKKPQKLDFGLQPHKIPDCD
VALYLMPSSSARCAQFPRAQDKVHFYIKLRELRDQLRGIQRSTDIEEVDYTFNLELAKED
AKRMAIKEEQYDPGYEDAYGGAYVERGPEEGQAPGQTNGHCTFSTGENTEGAQEATTSQT
AEGQLPDGQWMTQSFADQIPDISGGPKDGSV
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagctgaatggatcactgcccgttgtctccccggagtatcttcaacagtgg
gttcagtctacccagcagttccacgctctccaggcccagtattcaggcatcaacatgaac
catcagtatctctacccagagaggaagacgggagagtcagccatggcacacatggccaat
ccagatcccatgatggatcaacaagaacctgccaatctggcaaaacctgcagcaaaaaag
agaggcagaccagctcaacccaaggaacccaaaccacccaaaccacctaaaatacccaag
gcaccaaaaccgcccaaggacccaaatgcacctaaggccaaacccggtcctaaacccaag
aaggccactgaggctcaggcagatggaaagcaagagaagattgatgaaaccttcaagaaa
gtgaagaggaaaattgaccgcttcaagggaatgtcagaagaggaagtcatgaaaaaaact
ttaccagacctgctggaatacaacctggactatgttattatcggtatcaatccagggctg
atggcagcttacattggacgatggtttccaggacctggaaatcatttttggaagtgcctg
tttctgtctggatttactgaggagcagctcaaccacatgcatgacaccaccctgcctggc
aagtacaaaatgggcttcaccaacatggtggccagggcgacaccaggcagtaaagacctc
tcaagtaaagagttacgcgaaggaggcaaaattctcgtagagaagttgaagaaatacaag
cctcttattgctgttttcaatgggaaatgcatctatgaaatgttctgcagagagttgttt
ggtaaaaaaccacagaagcttgattttggtttgcagccacacaagatcccagactgtgat
gtggctctgtatctgatgccttcttccagcgctcgttgtgctcagttccctcgagctcag
gacaaagtccacttctacatcaagctgagggagctcagggatcagctgaggggcatccaa
agaagcactgacattgaggaagttgactacacattcaacctggagttggccaaggaggat
gccaagaggatggcgataaaggaggagcagtatgatcctggttatgaagatgcctatggt
ggagcatacgtagagagaggacctgaggagggccaggccccgggtcagaccaacggtcac
tgtacattctcaactggagaaaacaccgagggcgcacaggaggccaccacgtcacaaaca
gcagagggccagcttccagacggacagtggatgacccagtcctttgctgatcagatccca
gatattagtggtggaccaaaagatggcagcgtatga
DBGET
integrated database retrieval system
