Lates calcarifer (barramundi perch): 108889564
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Entry
108889564 CDS
T04895
Symbol
ext1b
Name
(RefSeq) exostosin-1b
KO
K02366
glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:
2.4.1.224
2.4.1.225
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
lcf01100
Metabolic pathways
Module
lcf_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
108889564 (ext1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108889564 (ext1b)
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
108889564 (ext1b)
2.4.1.225 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase
108889564 (ext1b)
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
O-Glycan
108889564 (ext1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin_GT47
RXYLT1_C
Motif
Other DBs
NCBI-GeneID:
108889564
NCBI-ProteinID:
XP_018541599
UniProt:
A0AAJ7PY08
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Position
LG3:complement(16157876..16268674)
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AA seq
740 aa
AA seq
DB search
MQAKKRYLILLSAGACLVLLFYLGGIQLPATSRSRHGRGRNGYRPDQPWPHFSDPLHPFL
PWDQTDNEEYNLHISPRQKRDVNTSVYKGKRCRMDSCFDFSLCQKNGFKVYVYPQQKGEK
ISESYQNILSTIEGSRFYTSDPGQACLFVLSLDTLDRDQLSPQYVHNLKTKVQNLPLWND
GRNHLIFNLYSGTWPDYTEDLGFDIGQAMLAKASISTENFRPNFDVSIPLFSKEHPRTGG
ERGYLKYNSIPPFRKYMLVFKGKRYLTGIGSDTRNALYHVHNAEDVVLLTTCKHGKDWQK
HKDARCDKDNAEYDKYDYKEMLHNSTFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWEL
PFSEIIDWNTAAVIGDERLLLQIPTTVRSIHQDKILSLRQQTQFLWEAYFSSVEKIVLTT
LEIIQDRVLEHSSRSSLMWNSHPGGLFALPQYSGYLGDFPFYYATLGIKPYPKFTAVIHA
VSPLVSQSQPILKLLAAVAKSQYCAQIIVLWNCDKPLPAKHRWPATSVPVIVIEGENKVM
SSRFLPYETIVTDAVLSLDEDTVLTTTEVDFAFTVWQSFPERIVGYPARSHFWDSNKERW
GYTSKWTNDYSMVLTGAAIYHRYYHYLYTNYLPTSLKNMVDQLANCEDILMNFLVSAVTK
LPPIKVTQKKQYKETMMGQSSRASRWADPDHFAQRQTCMNKFASWFGAMPLVHSQMRLDP
VLFKDQVSILRKKYRDIERL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccaaaaaacgctacctgatcctgctctcagccggtgcatgtctagtgcttctc
ttctacctcggagggattcaacttccagcgacgagcaggagccggcatggccgcggccga
aatgggtaccggcccgaccagccctggcctcacttctcggaccctttacacccttttctg
ccctgggatcagacggacaacgaggagtacaacctgcacatatctccgaggcagaagagg
gacgtcaacacgagtgtttacaaaggcaaacggtgccgcatggattcatgctttgatttc
tctctgtgtcagaagaacggattcaaagtttatgtttacccgcagcagaagggggagaag
atctccgagagttatcagaatattttatccaccattgagggctcgaggttttacacctca
gaccccggacaggcgtgtctgttcgtcctgagtctggacactctggaccgggaccagctg
tccccacaatacgtccacaacctgaagaccaaggtccagaacctgcccctgtggaacgac
ggcaggaaccacctcatatttaacttgtactcggggacgtggccggactatacggaagac
ctaggctttgacatcggtcaagccatgttggccaaagccagcatcagcaccgagaacttc
aggcccaacttcgacgtgtccatccccctcttctccaaggagcacccgaggaccggcgga
gagagggggtacctcaagtacaactccatcccgccttttagaaagtacatgctggtgttc
aaggggaagcgctacctgaccggtatcggctcggacaccaggaatgccttatatcacgtc
cacaacgcggaggatgtggtgctgctgaccacctgcaagcacggcaaagactggcagaaa
cacaaggacgcgcgctgtgacaaggacaacgcagagtatgacaagtatgactacaaggag
atgctccacaactccaccttctgtttggtgccccgcggcagacgactgggctcctttcgc
ttcctcgaggcgctgcaggctgcatgtgtgcctgtgatgctgagtaatggctgggagctg
cctttctctgagatcattgactggaacacagccgcagtcatcggcgacgagaggctcctg
ctgcagattccaaccacggtgcgctccatccaccaggataagatcctgtccctcagacag
cagactcagttcctctgggaggcctacttctcctctgttgaaaagatagtgctgaccact
ctggagatcatccaggaccgtgtgctggagcacagctccaggagcagcctgatgtggaac
agtcaccctgggggacttttcgccctgccgcagtactctggatacctgggagacttccct
ttctactacgccacactgggcattaaaccgtaccccaagttcacagcagtcatccacgct
gtctccccactggtgtcccagtcccagcccatactcaagctcctggcagctgtggccaag
tcccagtactgtgcacagatcattgtcctgtggaactgtgacaagcctctccccgcaaag
caccgctggcctgccacctcagtgcccgtcatcgtcatcgagggagagaataaggtgatg
agcagccgcttcttgccctacgagaccatagtgaccgacgctgtcctcagcctggacgag
gacacagtgttaaccaccacagaggtggactttgcctttacagtctggcagagttttccg
gagcgcattgttggttaccccgcccgcagccacttctgggacagcaacaaggagcgctgg
ggctacacatccaaatggaccaacgattattcgatggtgctgactggggccgccatctac
cacaggtattaccattacctgtacaccaactacttgccgactagtctgaagaacatggtg
gatcagctggccaactgtgaggatatcctgatgaacttcctggtctctgctgtcactaag
ctgccacccatcaaggtcacacagaagaaacagtataaggagaccatgatggggcagtct
tcgagggcttctcgttgggccgatccagaccactttgcccagcgacagacatgcatgaac
aagttcgccagctggtttggcgccatgccgctggtccactctcagatgagactggacccc
gtcctgttcaaggaccaggtctccatcctccgcaagaaatacagggacattgagaggctc
tga
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