KEGG   Lates calcarifer (barramundi perch): 108890468
Entry
108890468         CDS       T04895                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, E-D beta chain
  KO
K06752  MHC class II antigen
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04145  Phagosome
lcf04514  Cell adhesion molecules
lcf04672  Intestinal immune network for IgA production
lcf05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    108890468
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    108890468
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    108890468
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108890468
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108890468
Exosome [BR:lcf04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   108890468
  Exosomal proteins of epithelial cells
   108890468
  Exosomal proteins of breast milk
   108890468
SSDB
Motif
Pfam: C1-set MHC_II_beta C2-set_2 Ig_3 C2-set_3
Other DBs
NCBI-GeneID: 108890468
NCBI-ProteinID: XP_018542857
UniProt: A0AAJ7VA46
LinkDB
Position
Unknown
AA seq 206 aa
MASSFLSFSLLFIAVCSADGFLNYVLTRCEFNSTDLSDIEFIRSYVYNRLEFIRFSSSLG
KFVGFTEFGVKSAEQWNQGPELAQMRAEKERYCVPNINLEYQAALTKTVKPSVRLHSSSP
PPGEHPIMLVCSVYDFYPKQIRVSWTRDGQEVTSDVTSTEELPNGDWYYQVHSQLVYTPR
SGEKISCVVEHASLKEPLVTDWDAEE
NT seq 621 nt   +upstreamnt  +downstreamnt
atggcttcatcctttctcagcttctccctcctcttcatcgctgtctgctcagcagatgga
tttctgaactacgtgttgactcgctgtgagtttaactccactgatctgagtgacatcgag
ttcatcaggtcgtatgtttacaacagactggagttcatcaggttcagcagcagtttgggg
aagtttgttggattcactgagtttggagtgaagagcgcagaacaatggaaccaaggtccg
gagctggctcagatgagagctgagaaagaaagatactgtgttcctaacattaaccttgag
tatcaggctgctctgactaagacagtcaaaccctctgtcaggcttcactcctcatctcct
cctcctggtgaacatcccatcatgttggtctgcagcgtctacgacttctaccccaaacag
atcagagtgagctggaccagagacggacaggaagtcacctctgatgtcacttccaccgag
gagctgcccaatggtgactggtactaccaggtccactctcagctggtgtacacacccagg
tctggagagaagatctcctgtgtggtggagcacgccagcctgaaagaacctctggttact
gactgggatgcagaagagtga

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