Lates calcarifer (barramundi perch): 108891243
Help
Entry
108891243 CDS
T04895
Name
(RefSeq) class I histocompatibility antigen, F10 alpha chain
KO
K06751
MHC class I antigen
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
lcf04145
Phagosome
lcf04218
Cellular senescence
lcf04514
Cell adhesion molecules
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108891243
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108891243
04145 Phagosome
108891243
09143 Cell growth and death
04218 Cellular senescence
108891243
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108891243
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108891243
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
108891243
Exosome [BR:
lcf04147
]
Exosomal proteins
Proteins found in most exosomes
108891243
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
Antigens
108891243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
MHC_I_2
Motif
Other DBs
NCBI-GeneID:
108891243
NCBI-ProteinID:
XP_018543870
UniProt:
A0AAJ7Q195
LinkDB
All DBs
Position
LG3:complement(21956898..21964068)
Genome browser
AA seq
465 aa
AA seq
DB search
MYLTVFFVLLGTGLTVNCERHSLTYIYTALSKPVGLPGIHEFTAMGMLDGRMIDYFDSDN
PKKVPKEKWMKEKLESDYWEKGTQSRQSKQQWFKVNIGILKERMRQNDSDIHVLQWMTGC
EGDVLSDGNLMFHRGLYMLSYDGNDFLSFDDANSVWVAPTDEAVQTKRKWDNDQDLKDKT
KGYVEHECIQWLNKFMMYEEQQLKSAPKPKVYLFAKDSKVKANTILTCLATGFYPKDIIL
KIKRGDRVLTREDGLVTSGVRPNGDDTYQRRDSVEILKTDKSEYTCGFIHEASGVWIEKV
WDHTLHEASLSRPFIGALSGVLVVVGLVAVVLIVLWRLGYIAFHHSRRRNNAQGGNNQRT
VTASAVPLLNTNSQGCKNMTTVAVQTPTTIPPSPFFGQGCKNMTTVAVQTPTTIPPSPFF
GQATNNTPVTNNAPATNHISPEKKPLLSPDDNDHPEQNGSGADEE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaaccgtcttctttgtcctcctggggacaggactgacggtaaactgcgagaga
cactccctcacttacatctacaccgctctctccaaacctgttggactccctggcatccat
gagttcacagccatgggtatgctggacggcaggatgatcgactactttgacagcgacaac
ccaaagaaagttcctaaagagaagtggatgaaagagaagcttgagtcagattactgggag
aaagggacacagtcccgccagagcaaacagcagtggttcaaggtcaacatcgggatcctg
aaggaacgaatgagacagaacgactcggacatccatgttcttcagtggatgacgggctgt
gagggcgacgtactgtctgatggcaacctgatgttccaccgtggcctgtacatgctcagc
tacgatggaaacgacttcctgtccttcgatgatgctaactcagtctgggtcgctccaact
gacgaggcagtccagaccaagaggaagtgggataatgaccaggacctgaaagacaaaacc
aaaggctacgttgagcatgagtgcatccaatggttgaacaagttcatgatgtatgaagaa
cagcagctaaaatcagcccctaaacctaaggtttacctgtttgcaaaggactccaaagtt
aaggcaaacaccattctgacgtgcctcgccacaggcttctacccaaaagacatcatcctg
aagatcaagaggggtgaccgagttctaactagagaggacggactggtgacctcgggcgtt
cgaccaaatggagacgacacctaccagagaagagacagcgtggagattttaaagactgac
aagtctgaatacacctgtgggttcattcatgaagcgtctggtgtctggattgagaaggtc
tgggatcacacacttcatgaggcttcactatccagacctttcattggtgccttgtcagga
gtcctggttgtggttggtcttgtggctgtggtgctgattgtcttgtggagactgggctat
attgcatttcaccacagtagacgaaggaacaatgcacaaggtggtaacaaccagagaact
gttacagccagtgctgtccctctcctgaacacaaacagtcaaggttgtaaaaacatgaca
acagttgctgtccagacacccactaccatccccccctctcctttcttcggtcaaggttgt
aaaaacatgacaacagttgctgtccagacacccactaccatccccccctctcctttcttc
ggtcaagcaactaataacaccccggtaactaataacgccccagcaaccaatcacatttct
ccagagaagaaacctctcctgagtccagatgacaatgaccaccctgagcagaatggaagt
ggtgcagacgaggagtga
DBGET
integrated database retrieval system
