Lates calcarifer (barramundi perch): 108892114
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Entry
108892114 CDS
T04895
Name
(RefSeq) major histocompatibility complex class I-related gene protein isoform X2
KO
K06751
MHC class I antigen
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
lcf04145
Phagosome
lcf04218
Cellular senescence
lcf04514
Cell adhesion molecules
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108892114
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108892114
04145 Phagosome
108892114
09143 Cell growth and death
04218 Cellular senescence
108892114
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108892114
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108892114
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
108892114
Exosome [BR:
lcf04147
]
Exosomal proteins
Proteins found in most exosomes
108892114
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
Antigens
108892114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
MHC_I_3
Motif
Other DBs
NCBI-GeneID:
108892114
NCBI-ProteinID:
XP_018545075
UniProt:
A0AAJ7Q2N6
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Position
LG3:22612045..22621371
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AA seq
437 aa
AA seq
DB search
MSADPQLFPPRCSPSFSPGAGEGFGGVEPPSLPPLSEMETLRMFVNERLTAAVDDILELF
GSVARYREQIDRQIDRQLDGLRSEEGRRSRAAVIHSLKHVYLASSEVQNFPDFVAVVFVD
GIQTDHYDSNTKSTVPTQVWMNRVTADDPEYWKRQTLYWEGQEQIGRVNIETLKGRFNQT
GGIHVIQVLNGCEWDDETGDVSGFGLISYDGEDILILDMKAQRWIATKAELLRTQHKWNN
DKSWIEFMEHRLTQECPVRLKNSLDYGKSFVQRTDLPSVSLLQKTPVSPVTCHATGFYPD
RAMMFWSRDGEELHEHVDHSEILHNHDSTFQMSVDLDLSLVKPEDWPRHECVFQLSGVKD
DIITKLDPAIIKTNWVEKPSVTALPITLPAAAAVAIILVATGIIVYKKKKAMNPSDSPDN
STELSEKLNPPDSMQTS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggacccgcagctcttcccgccgcgctgctccccgtccttctctcccggagcc
ggggagggcttcggcggcgtggagcctccctcgctccctccgctgtcagagatggagacc
ctgcggatgttcgtgaacgagcggctgacggcggcggtggacgacatcctggagctgttc
gggagcgtagcccggtaccgggagcagatagaccggcagatagaccggcagctggacggc
ctgaggtccgaggagggcaggcggagccgggcagcagtgatacactccctgaagcatgtc
taccttgcttcctctgaggtccaaaacttccccgactttgtggctgttgtgtttgttgat
ggaattcaaacagatcactatgacagcaacaccaagagcacagtacccacacaggtctgg
atgaaccgagtcacagcagatgatccagagtactggaaaaggcaaactttgtactgggaa
ggtcaagagcagataggaagagtcaacattgagactttaaaagggcgctttaaccagact
ggaggcatccatgtaatccaggtgttgaatggctgtgagtgggatgatgagactggagat
gtcagtggctttggtctgattagttacgatggagaagacatcttaatactggacatgaag
gcacagaggtggattgctacaaaagcagagcttctaagaactcaacataagtggaataat
gacaaaagttggatagagttcatggagcaccgtttgactcaggagtgccctgtgaggctg
aagaacagtttggattacgggaagagctttgtgcagagaacagaccttccatcagtgtct
ctcctccagaagactcccgtgtctccagtgacatgccatgccacaggtttctaccccgac
agagccatgatgttttggagcagagatggagaggagcttcacgagcatgtggaccacagt
gagatcctccacaaccatgacagcactttccagatgagcgtggatctcgatctttcgctg
gtcaaacctgaggactggccacgtcacgagtgtgtttttcagctgtctggagttaaggat
gacattatcaccaagctggacccagctataatcaagactaactgggttgagaaacccagt
gtcacagcactccccatcactttgcctgcagcggctgcagtggctatcatccttgtggcc
acaggaatcattgtttacaaaaagaaaaaagccatgaacccttcagactctcctgacaac
agcactgagctttctgagaaactgaatccacctgattccatgcaaacctcttag
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