Lates calcarifer (barramundi perch): 108892295
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Entry
108892295 CDS
T04895
Symbol
cd40
Name
(RefSeq) tumor necrosis factor receptor superfamily member 5 isoform X1
KO
K03160
tumor necrosis factor receptor superfamily member 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04060
Cytokine-cytokine receptor interaction
lcf04514
Cell adhesion molecule (CAM) interaction
lcf04620
Toll-like receptor signaling pathway
lcf04672
Intestinal immune network for IgA production
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
108892295 (cd40)
04514 Cell adhesion molecule (CAM) interaction
108892295 (cd40)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108892295 (cd40)
04672 Intestinal immune network for IgA production
108892295 (cd40)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
lcf04050
]
108892295 (cd40)
04090 CD molecules [BR:
lcf04090
]
108892295 (cd40)
Cytokine receptors [BR:
lcf04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
108892295 (cd40)
CD molecules [BR:
lcf04090
]
Proteins
108892295 (cd40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
DUF6693
Motif
Other DBs
NCBI-GeneID:
108892295
NCBI-ProteinID:
XP_018545316
UniProt:
A0AAJ7Q2Z3
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Position
LG6:complement(23555151..23560517)
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AA seq
320 aa
AA seq
DB search
MWGLITGATTMRLLLMMFVLTATASAELNCDPLTQYAKNGECCKMCPPGTSMSNIGSCQE
PQCQECKENEYQDKYTFESKCQLQPYCDKNSGFEKPVHQSKKERTTCKCENGFHCSSQTC
IICVAHTTCKPGEGVRFEGNHTDDRVCWKCPNGWFSNSENSTCQKLTECADGYTVKVKGT
DTSDTVCEIQLRQHLALIVVCLLIALTITVAFVVYLCKGDARRKVKGCVEACRADKQELP
GEANTLMVTQEETEKELTIPEQPSTQEEGASRTPEENEDELSTELSAGVIITDNGNYVVQ
ENGKADILSRQESQTQTYTD
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgtggggtcttataacaggagccactacaatgcgtctactgctgatgatgttcgtgtta
acggcgacagcctccgctgagctcaactgtgacccactaactcagtatgcgaagaatggc
gaatgctgcaaaatgtgtcctccaggtaccagcatgtcgaacatcggctcttgtcaggaa
cctcagtgccaagagtgtaaggagaacgaatatcaggataaatacacatttgaatccaag
tgtcagcttcagccgtactgcgacaaaaatagcggctttgagaagcctgtccatcagagc
aagaaggaacgaaccacctgcaagtgtgagaacggattccactgctccagtcagacttgt
ataatctgtgtggcacacacaacctgtaaaccaggagagggtgttcgtttcgaaggcaat
cacacagacgacagagtgtgttggaaatgtcccaatggctggttttcaaattcagagaac
agcacctgtcagaaattaacagaatgtgcagatggatataccgttaaagtcaaagggaca
gacacatctgacaccgtctgtgaaatacagttacggcagcacttggctctgatcgtcgtt
tgtcttttaattgctttaacaattacagttgcattcgtagtctatctgtgcaaaggagat
gcaaggagaaaggtaaagggctgtgtggaggcatgtcgtgcggacaaacaggagctaccg
ggagaagccaacacactaatggtgacccaggaagaaactgaaaaagagctcacaattcct
gaacagccgtccacacaagaggagggtgcttcacggacgccggaggagaacgaggacgag
ctaagcacagagttgtccgcgggagttattatcactgacaatggaaactatgtggtacag
gagaacgggaaagcagatatcctctccagacaggaatcacaaacgcagacatacacagac
tga
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