Lates calcarifer (barramundi perch): 108893071
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Entry
108893071 CDS
T04895
Name
(RefSeq) F-box/WD repeat-containing protein 7 isoform X2
KO
K10260
F-box and WD-40 domain protein 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108893071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108893071
04121 Ubiquitin system [BR:
lcf04121
]
108893071
Membrane trafficking [BR:
lcf04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
108893071
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108893071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML_2
Beta-prop_EML
WD40_MABP1-WDR62_2nd
F-box-like
ANAPC4_WD40
Beta-prop_Nup120_160
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_RIG_1st
F-box
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
WD40_RFWD3
PQQ_2
Beta-prop_IFT140_2nd
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_LRRK2
WD40_like
KNTC1_N
Beta-prop_IFT140_1st
eIF2A
CDtoxinA
PALB2_WD40
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
108893071
NCBI-ProteinID:
XP_018546389
UniProt:
A0A4W6EN15
LinkDB
All DBs
Position
LG5:complement(7652047..7717533)
Genome browser
AA seq
553 aa
AA seq
DB search
MGFYGTLKMIFYKMKRKLDHGPEVRSFPSGKKPCKGPEYPSPTGIVPCPATPTTFGHIRT
ANGQGQQRRRITSIQPPTGLQEWLRTFQSWTGPEKLLALDELIDSCEPTQVKHMMQVIEP
QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCREEGIDEPL
PLKKRKIVKPGFTHSPWKSAYIRQHRIDTNWRRGDLKSPKVLKGHDDHVITCLQFCGNRI
VSGSDDNTLKVWSAITGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI
HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV
VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI
HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPHKHQSAVTCLQFNK
NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE
TKLLVLDFDVDMK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggggttctacggcactttaaagatgattttctacaaaatgaaaagaaagttggaccat
ggccccgaggtccgatctttcccttcaggaaaaaagccctgcaaaggcccagagtatcca
agcccgacaggaattgtcccatgtccagccacacccaccacatttggccacatcagaaca
gccaacggtcaggggcaacagagacggcgcatcacctcaatccagccacccacgggtctc
caagaatggctccgaacatttcagagctggactggccccgagaagctgctggcgctggat
gagttgatcgacagctgtgagcccacacaagtcaagcatatgatgcaggtgatcgagccg
cagtttcagcgagactttatctccctgctgcccaaagagctggctttgtatgtgctgtca
ttcctggaaccgaaggacctcctccaagcagcccagacgtgtcgctactggcgcatcctg
gcagaagacaacctgctgtggagggagaaatgcagggaagaaggcatcgatgagcctctg
cccctcaagaagaggaaaatcgtaaagcctggcttcactcacagcccctggaagagtgcc
tacatcaggcagcacagaatagacactaactggaggagaggggacctcaaatcacccaag
gtgctgaaaggtcatgacgaccatgtgatcacctgcctccagttctgtggcaaccgcata
gtcagcggctctgacgacaacacgctgaaagtctggtcggctatcacaggaaagtgtctg
cggacgttggtgggccacacagggggcgtgtggtcatcccagatgcgagacaacattatt
atcagcggctctactgatcgcacactcaaggtctggaacgcagagacaggagaatgtatc
cacaccctctatgggcatacctcaacagtgcgctgcatgcacctacatgagaaaagggtg
gtcagtggctctcgtgacgccacgttgcgcgtctgggacatcgagacaggtcagtgttta
cacgtcctcatgggccatgtggcggcggtgcgctgcgtccagtacgacgggcggcgggtg
gtcagcggtgcctacgacttcatggtcaaagtgtgggaccccgagacggagacctgcctc
cacacgctgcagggccacaccaacagagtgtactcgttacagtttgatgggatccacgtg
gtgagcggctcattggacacgtctataagggtctgggacgtggagacgggcaactgcatc
cacacgctaacggggcaccagtccctcaccagcggcatggagctcaaagacaacatcctg
gtctcaggcaacgcagactccactgtcaagatctgggacatcaagacgggccagtgcctg
caaacactgcaaggtccacacaagcaccagagcgctgtgacatgtctccagttcaataag
aactttgtcatcaccagctcagacgatggcacagttaaactgtgggacctgaagactggg
gagttcatccgaaatctggtgactctggaaagcggcggcagcggcggtgtggtgtggcgc
attcgggcctccaacaccaagctggtgtgcgcagttggcagccgcaacggcacagaggag
accaagctgctggtgctggactttgacgtggacatgaagtga
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