Lates calcarifer (barramundi perch): 108893518
Help
Entry
108893518 CDS
T04895
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04517
IgSF CAM signaling
lcf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108893518
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108893518
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
PDZ_6
cNMP_binding
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108893518
NCBI-ProteinID:
XP_018547129
UniProt:
A0A4W6DWW3
LinkDB
All DBs
Position
LG20:complement(16858877..16999482)
Genome browser
AA seq
1711 aa
AA seq
DB search
MSVLRWHRLSALWKNWMFNQEPAEEQGQISEAPGHEAEPGKKEGNTSKDHNSDLMELKTQ
NLDYENQKSEVESQNLEFTNLNSGPKIQKSELLKRSCEDRSSSCPHAPEGCGCESRRSCY
SEEGVDCLLQVDNGSEGDDGFLQREGSQRRSRRRFRRVNPRGERELITDGQEPAGYNTDY
VNNQLPADLNKMHLTDHAHQQVMHMPPSQSGCSIASDSGSSSLSDIYQATESELGDVDLS
GLPEAAVDSEEEEEEDEDLERASDTLLGRDLVRECLEKDPADRNDDDIEQLLEFMHQLPA
FANMTMSVRRDLCSVMVFEVVEQAGTVILHDKQELDLWYVILNGAVEISHPEGRVETLCM
GNSFGISPSLDKQYMNGEVRTKGDDCQFVCIAQEDYWRILNHVEKNTHKVEEEGEIVMVK
EHRELDRSGTRKGHIVIKGTPERLIMHLVEEPSVVDPTYIEDFLLTYRTFLSSPMEVGKK
LLEWFQVDSLRDTVTRIVLLWVNNHFNDFEGDPAMTRFLEEFEKHLEVTKMKGHLRLLNI
ACAAKAKWRQITLQKASRESPLYFSVQGGSERGFGIFVESVEEGSKAAEAGLKRGDQIME
INGQNFENISFSKAVDILRNNTHLSLTVKTNIFVFKELLSRIVHEKKNGGPHIPKIQEKK
GNRFSIPDLPGDMEFPTDHKSTRKMKANTVSGGRNKIRKMLEKTRFSILPPKPFSDGGMG
QSQDDSIVGTKQCRHSVAIMPIPGNLSSSSPDLLQPATSVLDFSNPADIPDQVIRVFKAD
QQSCYIIISKDTTAKDVVNHTVNEFGLLAAPETYSLCEVSVSPEGVIKQRRLPDQLSKLA
DRIQLNGRYYLKNNMETETLCSDEDAQDLLRESQISLLQLSTMEVAAQLSMRDFELFRNI
ESTEYVDDLFKLDSSVGSGNLKQFEEVINQETFWVATEILKEPNALKRMKTIKHFIKIAL
HCRECKNFNSMFAIISGLNLAPVARLRSSWEKLPSKYEKLFGDLQDVFDPSRNMAKYRNT
LSSQSMQPPIIPLFPVVKKDLTFLHEGNDSSVDGLVNFEKLRMIAKEIRHVVRMTSANMD
PALMFRQRKKRWKSLGSLSQGSTNSNMLDVQGGAHKKRVRRSSLLNAKKLYEDAQMARKV
KQYLSNLTVETDEEKHQIMSLQCEPAYSTLSKNLSERRSTKSDMSPVSLRSALPSGKTQN
RVSQVLQVQVPLNPLRKKSTAKDIGTPNSNSPQVVKKPPVNSSEEWSTKRPSDDTVSTIS
SLHSSPTVSPQGSPRKVGGVAKSQNSSQMNLSGSSSSLTSDASTKAGTVSLRSYGIGYAL
LPAGKADNLSDSSHSEISSRSSICSVDSVPAPGLDDRCSNSNRICTTTAAITSTTTTTVA
AAVVESTAATHALLNADYNQPSTSSSSTARGYVTRASTFTSSTSTEELTPDHTSLDSVAD
SGRGSWTSCSSNSHDSFQSLPPSSCRPWDHGIHGHPLSLPHTHLGGFKHTQLAGPIAEVE
AVGHTWANDGATKQHSRDSSSDLSNQSRQSWASSSSLSDTYEGNYGTIKRRNTSEHPSSP
TNEEGGQSTDPAYKTVTSSTEKGLIVYCVTSPAKDERYRAPPPTPPGYQGLALGDLGLTD
GVVGGPGGLLPRPPHLKPPDYSVALQRSKLLQSPGAASSLAEARRLAGNHHLHHQEARTT
GSTQGYSRPPSICLPPQELADSEDDEQVSAV
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgctccgctggcaccggttgtctgcactctggaagaattggatgttcaaccag
gagccagcagaagagcaaggccagatctcagaagctccaggacatgaagcagagccaggg
aaaaaggaagggaacacatccaaggatcacaactcagacttaatggagcttaagacccag
aatttggattatgagaaccagaaatcagaagtagagagccagaacttggaatttacaaat
ctgaactcgggtcctaagatccaaaagtccgaacttcttaaacgcagctgtgaggaccgg
tcttccagctgtccccacgcacctgaaggttgtggctgtgaatcccgtagaagctgctat
tctgaggagggtgttgactgtttattgcaggtggataacggcagcgagggggacgacggt
tttctacagagagagggatcccagcggaggtccaggcggcgcttcaggagggtcaacccc
aggggagagcgggaactcatcacagacggccaagaacccgccggctacaacacggattat
gtcaacaaccagcttcctgctgacctcaataagatgcacctaacagaccacgcccaccag
caggtgatgcacatgcctcccagccagtcaggatgcagcatcgccagcgactcggggagc
agcagcctgtcagatatttatcaggccacagagagtgagcttggagatgtggacctgtct
ggacttccagaggctgctgtggatagtgaggaagaggaggaggaagacgaagacctggag
agagcttcggacactcttctggggcgagatctagtccgagagtgtctggaaaaagaccca
gccgaccgcaacgatgacgacattgagcaactactggagtttatgcaccagctgcctgcc
ttcgccaacatgaccatgtctgtgcggagggacttgtgcagcgtcatggtgttcgaggtg
gtggagcaggccggcacagtcatactgcatgacaaacaagagctggacctctggtatgtt
atcctgaatggggcggttgagatcagccacccggagggaagagtggagactctttgcatg
ggcaacagcttcgggatctcgccctctctggacaagcagtacatgaacggagaagttcgc
accaagggggacgactgtcagttcgtctgcatcgctcaggaggactactggcgcatcctc
aaccatgtggagaagaacacgcacaaggtggaggaggagggggagattgtgatggtgaag
gaacaccgcgagcttgaccgcagcgggaccaggaaaggacacattgtcatcaagggaacc
ccggagcgtctgatcatgcacctggtggaggaaccgtcagtagtggaccccacctacatc
gaagacttcctgctgacctacaggaccttcctgtcaagtcccatggaggttggcaagaaa
ctgttggagtggttccaagtggacagcctccgggatacggtaacaagaatagtgctgctg
tgggtcaacaaccacttcaatgactttgagggtgacccagctatgacacgctttctcgag
gagtttgagaaacatctagaagtaacaaaaatgaagggccatttgcggctgctgaacata
gcgtgtgctgccaaggccaagtggagacagatcactctgcagaaggcgtccagggagtca
ccgctctacttcagcgtgcagggcggcagcgagaggggattcgggatctttgtggagtcg
gtggaggaagggagcaaggcggcagaggccggactcaagcggggagatcagatcatggag
atcaatggtcagaactttgagaacatctccttctccaaagctgttgatatcttgagaaac
aacacacacctctctctcacagtcaaaaccaacatatttgtcttcaaagagctcctgagc
aggattgtgcacgagaagaagaatgggggtcctcacattcccaagatccaggagaaaaaa
ggcaatcgcttctccatccctgacctccctggagacatggagttccctacagaccacaag
agtaccaggaaaatgaaggccaatactgtgtcaggtggacgcaacaagatcaggaagatg
ctggagaagacgcgcttcagcatactgccacccaaaccattcagtgatggcggtatgggt
cagtcccaggacgacagcatcgtgggtaccaagcagtgtcgtcacagcgtagccatcatg
cccatcccaggcaacctttcgtccagcagccccgacctgctgcagccggccaccagcgtc
ctcgacttctccaatcctgcagacatcccagaccaggtgattcgggttttcaaggccgac
cagcagagctgctacatcatcatcagtaaggacactactgccaaggatgtggtcaaccac
accgtcaatgagttcggcctcctcgcagcacctgagacctactccctgtgtgaggtgtcg
gttagccccgagggagtcataaaacagcgccgcctgcccgaccagctttccaaactggct
gatcggattcagctcaatggcaggtactacctgaagaacaacatggagacggagacattg
tgttcagacgaggatgcccaggacctcctcagggagagtcagatctctctgctgcagctc
agcaccatggaggtcgctgcccagctctccatgagggactttgagctctttaggaacatt
gagtccacagagtacgtggacgacttgtttaaactggactcctcagtgggaagtggcaat
ctgaaacaatttgaggaggtcataaaccaggagacattctgggtcgccacagagatcctg
aaggagcccaacgccctgaagaggatgaagaccatcaaacacttcatcaagatcgccctg
cactgcagagagtgcaagaattttaactccatgttcgctattatcagcggcctgaacttg
gcaccggtggctcggctgcggagctcgtgggagaagttgcccagcaagtacgagaagctg
ttcggggacctgcaggacgtctttgacccttccaggaacatggccaagtaccgcaacacc
ctgagcagccagagcatgcagccgcccatcatcccactgttcccagtggttaagaaggac
ctcacctttttacatgaaggcaatgactccagcgtagacggtcttgtgaacttcgagaag
ctgaggatgatcgcaaaggagatcagacatgtggtgcggatgacctctgccaacatggac
cctgctctcatgttcagacagaggaagaagaggtggaagagtttagggtctttgagtcag
ggcagcaccaattccaacatgctggacgtgcagggcggcgcccacaagaagcgagtacgt
cgcagctcgcttctcaacgccaagaagctgtacgaggacgctcagatggccaggaaggtg
aagcagtacctgtccaacctgacagtggagacggacgaggagaaacaccaaatcatgtcc
ctgcaatgtgagccggcctacagcaccctgtcaaagaacttgagtgagagacgatccacc
aagtcggacatgtctccagtgtctctgcggtcggcactgccctcgggaaaaacacagaac
agggtgtcacaagtccttcaggtccaggtcccactgaaccccctgcgaaagaagagtact
gccaaggacataggcacaccaaactccaattctcctcaggtggtgaagaaacctccagtg
aactcatcagaggagtggagcaccaagaggccgtctgacgacaccgtctccaccatctcc
tcccttcactccagccccacggtgtcaccacagggttctccacgcaaagtgggaggcgtg
gccaagtcccagaactccagccagatgaacctgtcgggatcttcgtcgtcactgaccagc
gatgccagcacaaaggccggcactgtcagcctgcgcagctacggcataggttacgccctc
ctaccagccggtaaagcagacaacctgtcggactccagtcacagcgagatatcctcccgc
tccagtatctgttcagttgactcagtgccagctcccgggcttgatgaccggtgtagtaac
agcaacaggatctgtaccactactgctgccattacttctacaactactacaacagtggct
gctgcagttgttgagagcacagcagcaacacatgcactcttaaatgctgattacaaccag
cccagcacaagttcctcatcgactgcgcgaggatatgtaacgcgagcctccaccttcacc
tcctccacctccacggaggagctgaccccagaccacacctccctggactcggtggccgac
agcggccggggcagctggacgtcctgctcctctaactcccacgactccttccagagcctc
ccgccctcctcgtgtcggccctgggaccatggcatccatgggcacccgctttccctcccg
cacacacacctgggcggtttcaagcacacacagctggccgggccgatagcggaggtcgag
gccgtgggtcacacgtgggcaaatgacggcgccaccaagcagcactccagagactccagc
tcggatctgtccaatcagtcgcggcagagctgggcgtcgtctagctcgctgtcggacacc
tacgaggggaattacgggacgataaagcgccgaaacacctcggagcacccctcctcgcca
accaacgaggaaggaggccaaagcacagaccccgcctacaaaacggtgacatcaagcaca
gagaaaggcctgatagtgtattgtgtcacctcccccgccaaggatgagcgttaccgagct
ccccctcccacccctccaggctaccagggtctggctctgggggatctcggcctcacagac
ggagtagttggtgggcctggaggtctcctccccaggcctcctcacctcaaacctccagac
tacagcgtggccctgcagagaagcaaactcctgcagagccccggagcagccagcagtttg
gctgaggcgcggaggctggctggcaaccatcacctccaccaccaagaggcccggacaact
ggctccacgcagggctactccagaccacccagcatctgcctcccaccacaggagctggct
gacagtgaggatgatgaacaggtgtcggcggtgtaa
DBGET
integrated database retrieval system
