Lates calcarifer (barramundi perch): 108894065
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Entry
108894065 CDS
T04895
Symbol
mmp13a
Name
(RefSeq) collagenase 3a
KO
K07994
matrix metalloproteinase-13 (collagenase 3) [EC:3.4.24.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108894065 (mmp13a)
Peptidases and inhibitors [BR:
lcf01002
]
Metallo peptidases
Family M10
108894065 (mmp13a)
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GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Reprolysin_3
DUF4953
Reprolysin_5
Reprolysin_4
Peptidase_M7
Peptidase_M54
Motif
Other DBs
NCBI-GeneID:
108894065
NCBI-ProteinID:
XP_018548146
UniProt:
A0AAJ7Q6V1
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Position
LG20:6502196..6505219
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AA seq
472 aa
AA seq
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MNTFNLSILLSLAVAVYCVPLPQLTEQDENFAEGYLKKFFNLTDETGPTVRRGISPVSRK
LAEMQRFFGLKITGALDAETMAMMKKPRCGVPDTKIADFSTFGNNLKWKKNSLTYRIENY
TPDMSESEVDDSIEKALQVWAKVTPLRFTRLFSGTADIMISFSRGSHGDYYPFDGPDGTL
AHAFAPSPGIGGDAHFDEDENFTYRSNRGYVLFMVAAHEFGHSLGLSHSEDPGALMYPVY
TYRDPDTFILPRDDVKGIQSLYGPNPDTVGPEPTAPPTPDACDSNLVLDAVATLRGEMLF
FKDSFFWRNHLQSNTLQHSFITNFWPNAPVNIDAAYESRELDSVLLFKGRKVWALSGYDL
VPGYPKSISSFGLPETVKKVDAALYNEDTGKTLFFVGSNYYSYDESSKTMDRGFPKRADE
TFLGLSTRVTAAFQYRGFAYLYSGSKMYEYSLGSGRMLRLLDNNYFLPCNKF
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaatactttcaacctgagcattctactaagcctggcagttgcagtttactgtgtgcca
ttaccacagcttacggagcaagatgagaattttgcagagggctacctgaagaaattcttc
aacctcacagatgagaccggtccaactgtcagaagggggatcagcccagtgagcaggaag
ctggctgagatgcagagattctttggcctcaagatcactggggcactggatgctgaaacc
atggccatgatgaagaaaccccgctgtggcgttccagacaccaagattgccgatttctcc
acatttggaaacaacctcaagtggaagaaaaacagccttacctacaggattgagaactac
acacctgacatgtctgagtcagaggtggacgactccattgagaaagcgctgcaggtttgg
gccaaagtcactcctctgaggttcacaagactcttcagtggcaccgctgacatcatgatc
tcctttagccgtggatcacatggagattattaccccttcgatggtcctgatggcactctt
gctcatgcctttgctccatctcctggtattggaggagacgctcattttgatgaagatgag
aacttcacttaccgctccaacagaggctacgtcctcttcatggtagctgcccatgagttt
ggccactctctgggcttgtctcactctgaagatcctggtgctctcatgtaccccgtgtac
acctacagggaccctgacaccttcattctgcctcgggatgatgtcaaaggcatccagtct
ctctatggtccaaaccctgacactgtgggtcctgaacccacagccccccccacccctgat
gcctgtgattcaaacctggtcctggatgccgtcgccaccctcagaggggagatgctcttc
ttcaaggacagcttcttctggcgtaaccaccttcagagcaatacacttcagcacagtttc
atcacaaacttctggcccaatgccccagtcaatatcgacgctgcttatgaaagccgagaa
ctagacagtgtcttgctgtttaaaggtcgcaaagtgtgggctctcagtggctatgacctc
gtacctggctatcctaagtcaatttccagttttggtctgcctgaaactgtgaagaaagtt
gatgctgctctctacaacgaagacactggcaagactttgttcttcgtaggcagcaattac
tacagttatgatgagtccagcaagactatggaccggggattccccaaacgggcggatgag
accttccttggactgtccaccagggtgacagcagctttccagtacagaggttttgcttac
ctctacagtggatccaaaatgtatgagtacagcctggggagtgggaggatgcttcgtttg
ttggacaacaactacttcttaccctgcaacaaattctaa
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