Lates calcarifer (barramundi perch): 108895001
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Entry
108895001 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108895001
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108895001
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108895001
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
108895001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
108895001
NCBI-ProteinID:
XP_018549169
UniProt:
A0AAJ7Q7U8
LinkDB
All DBs
Position
LG24:14362183..14382320
Genome browser
AA seq
1977 aa
AA seq
DB search
MFNTGVQRPYCGTSRGNQIGPRKIYVYDGRFENKKVTGTSLETSGWDFNYFLQILQREFE
INPHEIFVLVTTDRTVLDFDKFEELQDGSTIYLLQQEDQVLPVSTEEPIMFIPHYDTLIR
SGMYEYYASEGQKPLPYAFAELIDNALSATAKNTGMRTIELRMLFDESNGKPAVVVLDNG
CGMTSKQLNNWAVYRLSKFTRANSTLISKHEGYVRPDPVPRSLNSDISYFGVGGKQAVFY
IGHSARMISKARNSPDVHELVLSKEDFERKEKNREDIYSGIIRKRKPGDSSHVNNNDERF
LHSLIAEEYGKESFTAVVITGILPEHITFLKQDFQAWTRELAHIYHYYIHGVNGNDMSNN
AANSNHLSKIDIQVTLQEKPSRCPRVMNLREVDDDMQTLYINAAADTFEFKVSTGLDTGT
VEGVIRYHPFLYDKETYPQDPNAVQALPDDEDDDNESGVQHQARGKRPIFECFWNGRLIP
YTRVHEFDWCAWPIKGANKDREPLPKECYSRFSGVLFTDDRFQVSTNKLTFVDLELKMRN
KETIFTRVVNRQGQRTNIQKDFTQWLKHCHENLDKQVKFLGFQEIITRTDQQAKKKTHPW
ATFSAIQLDGKIYKTGQLVKSQRTQPIHHGTVVRFLLYGNHNQDVFATGGQVEVSLEPKG
LHEMTKIIPISKLDRTVSDEAIKKSIENDIAKLPHILKVDWPDGNLWPENAVCLAGSPFG
PLKIEILNKKGESMSRMPTVRQIVIKLSVKLKIVQHGPTNNVEVVTFVAQHSPKYGFWFK
KMENLTNPGKYTLFLNTTISDTDATVFGDRNLPSYKLKFTIKEGNAESFDMGVASSTLRV
GVPFDIPLQLKDRYGNLTMPLPNLQPVLTCSDLRLSYDTVDSSGTKFIIKGVKARGKVLN
YQQPKTYDLKVTLTGLKKDTQTLKISLLPGNPHSLHVKTKEDPIIVENGNPVRFNVEIHD
EAGNITAQPKEIVYCQVQELPPATIDCSTGAGQLVTKPINLKIIEGEPEKLKVKFWMPSQ
RRIPLVFRELKVMPSSRVSLIKICSQDDENLVLKNNEKIEWLAGGSLENLFYKLYDEAGR
AVPPTAEIASMIKVNWKADIDLKDLVQGKLPDIMVPIHVHEKRFYQVSYQDQSVSVSFTI
VPRPDEPKKLKATLLQNAVKLGETLSGNIRLELVDQYDNATNSLTSACVKHMTVKDEGLD
KSAVTFKWQESSSSVEVTGICFPSGTPGIREICFTYQGYVASVMVKVNPGDPAELKLVSG
PKQPLQVLNDHGIPTPFLVQVFDMWGNPSPDKRVVVELRSSPPALKVTTAVTSQPVDAEG
KASFTVTSVSGPKGYYQLEFNCSLNNKPIPGPSVNFTVLPDPNKPVSLAVEYNTLARFPA
GGTFPVFFVTVVSDDGSPMTTFNPAAALMLLWEGVPTETAPQPKVTRLRCSKPMENERKD
CFHFRDKEIPERAGRYTIQFSLSISNTKVLFSDEIPINVVANHPVKLRPDSEPPAPVVSC
SKDVANRTLVKNMTLRIMDAYGNPAGQDLGGKVVISITSLSGKSNIPLFEGKANRCEIGL
TDGKVHITRLTIMENSPGDVGSVYTLLFKPEVPMVPKPLAPFGLTFHFYNDAVNQQKMRE
LLKKKTELTVAVTAHNDLLTGYKDVLKLLTDQELTANHKETELRNVLNSRNMGIVKPLSI
PDIDRLLNDKTIQADEILKIPRRVCSIRDNFRGQQDVLGMVGHLACVLDDDAARVISWHI
RGDMDCVITKTTEAAQRIYKDTQGRQQVMALDSIFVSPLNRPLPHIRNGHILFNPPGNPV
YARDLLIYPHNKESCDIVFKNILGDTILIDDLDSGNKYRRTVVQNKIPCPTILTREGDRI
SGKGKFGGAQNKAPQTNTSLMFGAPLPQDYHTLQEQIDLLRQYRTAVQKRDSAEKERQEH
LEKMRSPQMLQNKQDMEEKKKQLEEIERELVTKPIRSMKRGPEDAGEPSGINTKRTK
NT seq
5934 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacacgggcgttcagcgtccttattgtgggacctctcggggaaatcaaattggg
ccgagaaaaatctatgtttatgacggccgcttcgaaaataaaaaggttaccgggacctca
ctggaaacaagtggttgggacttcaattacttccttcaaattttgcaaagggaatttgaa
atcaatccacatgaaatatttgtgttggtcaccacagacagaacggtcctggattttgac
aaatttgaggaacttcaagatggcagtacaatatacttactgcaacaggaggaccaagtt
ctaccagtgtcaacggaggagccaatcatgtttattcctcattatgatacgttgatcagg
agtggcatgtatgagtactacgctagtgagggccagaaaccattaccctacgcgtttgct
gagctgatcgacaacgctctgtcagccacagctaaaaacacaggaatgaggacgatagag
ctacgaatgctttttgatgaaagcaatgggaaacctgcagtggttgtcctagataacgga
tgtgggatgacctctaagcagctcaataactgggcagtgtacagactctctaaatttacc
agggcaaacagcacgctcataagtaagcatgaggggtatgttcggcctgatcctgtccct
cgtagtctcaacagtgatatatcctactttggggttggaggaaaacaggctgttttctac
atcgggcactcagccaggatgatcagcaaagccaggaactccccagatgttcatgagctg
gttctgtcgaaggaggattttgagagaaaggagaagaacagagaggatatttacagtggg
atcatcagaaaaaggaagcctggtgactcctcacatgtgaataacaatgatgagcgcttc
ctccactccttaatcgctgaggaatatgggaaggaaagcttcacagctgtggtcatcaca
ggaatcttacctgaacatatcacctttttgaaacaggattttcaagcgtggaccagagag
ctagctcacatatatcactattacatccatggagttaatggaaatgacatgagtaacaac
gctgcaaactcaaatcatctgtctaaaattgacattcaggtcaccttgcaagaaaagcct
tccagatgtccgcgtgtgatgaatctcagggaggttgacgatgacatgcagactctgtac
ataaatgctgctgcagacacgtttgagtttaaggtcagcaccggactagacactggcacg
gtggagggggtgattcggtatcatcctttcctctatgacaaggagacttaccctcaagac
ccaaatgctgtgcaagcacttcctgatgacgaggatgacgataatgagtctggagtccag
catcaagcaagaggaaagaggccgatctttgagtgcttctggaatggacggctcatacct
tacaccagagtacatgagtttgattggtgtgcctggcccattaaaggagcaaataaagat
agagaacctctgcctaaagagtgttacagtcgattttcaggggtcctgttcacagacgac
agattccaggtcagcacaaacaagctcaccttcgtggacctggagctgaaaatgaggaac
aaggaaactatcttcacacgcgttgttaacagacaggggcaaagaactaacattcagaag
gacttcacgcagtggctaaaacactgtcatgagaacttggacaagcaagtgaaattcctg
ggctttcaggagatcataactcgaacagatcagcaagctaagaaaaaaacacatccctgg
gcaacgttctccgccatccagttggacggcaaaatatacaaaacaggccaacttgtgaag
tctcagagaacgcagcccattcatcatggtactgtggttcgatttttgctgtatggaaat
cataaccaagatgtttttgccactggaggacaggttgaagtgtctctagaacccaaagga
cttcatgagatgaccaagatcatacctatctcaaagcttgacaggaccgtcagtgatgaa
gccatcaagaaaagcattgaaaatgatatcgccaagctcccacatatactaaaagtggac
tggccagatggtaacctctggccagagaatgctgtttgtctggctgggtctccatttggg
ccgctcaaaatcgaaatactgaacaagaaaggagagtcaatgtccaggatgccaacagtg
agacagatagtgataaaactgagtgtcaagctcaaaatagttcaacatggtcctacaaac
aatgtagaggttgtcacttttgttgcccagcactcaccaaagtacggtttctggttcaag
aaaatggagaatctgaccaacccagggaagtacacactgttcttgaacaccaccataagt
gacactgatgccaccgtctttggagacagaaaccttccaagctacaaactcaagttcacc
atcaaagagggtaatgctgagagtttcgatatgggtgttgcgagttccactcttcgcgta
ggggtgccatttgacattcctctgcagctaaaagatcgttacggcaacttaacaatgcct
cttcctaatctccagccagtactcacatgcagtgacctgcgtctgagctatgacacagtg
gacagcagtgggaccaagttcatcatcaaaggggtcaaagcaagaggaaaagtcttgaat
taccaacaacccaagacatatgacctgaaggtgaccctgaccggtctgaaaaaagacacg
cagactttgaagatcagtctgctccctggtaatccacattctctccatgtgaagacaaaa
gaagacccaatcatagtagagaatggaaatcctgtcaggttcaatgttgaaattcatgat
gaagctggaaacatcactgctcagcccaaagagatagtttactgccaggttcaggagctt
ccacctgcaacaattgactgcagcacaggagcaggacagcttgtgacaaagcccataaac
ctgaaaataatcgagggagaaccagaaaagctcaaagttaaattttggatgcctagtcag
aggagaataccgttggtctttagggagctaaaggtgatgcccagctcaagggtctccctg
ataaagatctgcagtcaagatgatgagaatctggtgctgaagaacaatgaaaagatagaa
tggctggctggaggctcactggagaacctgttctataagctgtatgatgaggctggcaga
gcagtacctcccactgctgaaatagcctctatgatcaaggttaactggaaagcagatatt
gatctaaaagatctggtgcaggggaagctgccggacataatggtgcccatacatgtgcat
gaaaagcgcttctaccaggtgtcctaccaagaccagagtgtgtctgtttcctttactata
gtacctcgtccagatgaaccaaaaaagctgaaagcaactctgctccaaaatgcagtgaag
ctgggtgaaaccctatctggaaacatccgcttggagcttgtggaccagtacgacaatgca
accaattcgctaacctctgcctgtgtgaaacacatgactgtgaaagatgagggcctggac
aaatcggctgtcactttcaaatggcaggagagtagcagctctgtcgaggtgacaggaata
tgtttcccgtctgggactccaggcatcagagagatttgcttcacttaccagggctatgta
gcatcagtcatggtcaaagtgaaccctggagaccctgcggagcttaaactagtcagcgga
cctaagcagcctttgcaggtgttaaatgaccacggcatccccacaccattcctcgtccaa
gtgtttgacatgtggggaaacccctctccagacaagagggttgtggtagaattgagatct
tctccgccagcactgaaggtgacgacagctgttacttcacaaccagtggacgcagaagga
aaagcctctttcacagttaccagtgtgagtggaccaaaggggtactatcagctagagttt
aactgttccctcaacaacaaacccatccctggtccatcagtgaacttcactgttctacct
gatcccaacaaacctgtcagcctggcagtggagtataacaccttggccaggtttcctgct
ggaggcaccttcccagtgttctttgtgactgtggtgtctgatgacggtagcccgatgaca
acttttaacccagctgctgcactcatgttgctgtgggagggagtaccaacagaaacagca
cctcaaccaaaagtcactaggctgagatgtagtaagcccatggagaatgagagaaaagac
tgttttcacttcagagataaagagatcccagaacgtgctggaaggtacaccatccagttt
tctctgtccatcagcaatacaaaagttctgttcagtgatgagattcctataaatgtagta
gccaatcatcctgtcaaactgagacctgactccgagccacccgccccagtcgtttcctgc
tctaaggatgttgctaaccgaaccttggtgaagaatatgaccctgagaataatggatgca
tatggaaacccagcagggcaggatctgggtggaaaggtggtcatttctataacaagcttg
agtggcaaaagtaacatccctctgtttgagggcaaagccaacagatgtgaaattggcctg
acagatggaaaagtccacatcactagattgaccatcatggagaatagccctggtgatgtt
ggcagtgtttacaccctcctcttcaaacctgaagtgccaatggttcccaagcccctggct
ccttttgggctcacctttcacttttacaatgatgcagtaaaccaacagaaaatgcgtgag
ctgttaaaaaagaaaactgagctgactgttgctgtcactgcacataatgacctcttgact
ggttacaaagatgtacttaaattgctgacagatcaagaactgactgcaaatcacaaagag
actgagctcagaaatgtgctcaatagtaggaacatgggaatagtaaaacctctatctatc
ccagatattgacagactcctaaatgacaaaaccatacaagctgatgagattctgaaaata
ccgagaagagtctgctccatccgtgacaacttcaggggacagcaggatgttttgggaatg
gttggtcacttggcctgtgtgctggatgatgatgctgcaagagttatttcctggcacatc
aggggtgacatggattgtgtcatcaccaaaacaacagaagcagcacagaggatctataag
gacacgcagggcaggcagcaggtcatggcccttgacagcatatttgtgtcaccgttaaac
agacctctgcctcacataagaaacggacacatactctttaatccccctgggaacccagtc
tacgccagagacctcctgatttacccccacaacaaggagagctgtgacattgtgtttaaa
aacatcctcggagacactattctgattgatgacctggactctggaaacaaatacaggcgc
acggtggtgcagaacaagataccctgtcccaccatactgaccagggagggggacaggatc
agtggcaagggcaagtttggaggggcacagaacaaagccccacagacaaacacatcacta
atgtttggagcccccctcccacaggattaccacacacttcaggaacaaatagacctgctc
agacagtaccgtacagctgtgcaaaagagagacagcgcagaaaaagaacgtcaggaacac
ttagaaaagatgaggtctcctcagatgctgcagaataaacaagatatggaggagaaaaag
aagcagctggaggagattgaaagagaacttgtgactaaacccatcagatcaatgaaacgg
gggccagaggatgctggcgagccttctggcatcaatacaaaaaggacaaaatag
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