Lates calcarifer (barramundi perch): 108895767
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Entry
108895767 CDS
T04895
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1 isoform X1
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108895767
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108895767
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
108895767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
EGF_3
hEGF
FXa_inhibition
Plasmod_Pvs28
EGF_MSP1_1
EGF_2
Motif
Other DBs
NCBI-GeneID:
108895767
NCBI-ProteinID:
XP_018550196
UniProt:
A0A4W6G4L7
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All DBs
Position
LG16_LG22:25507690..25632802
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AA seq
1554 aa
AA seq
DB search
MAWIKWGLLFSLSLFLSPVCVSAEQQQGQSGFRRLYVLQPGPGPGSGSAGADGGLRVSSI
STRHGPAGQPHTYNVELTANFGGQTRTRRMGNQAASVPQFSQQQPVVRQSGQEQSQQKQL
MKLSGVNVCGGQCCHGWSNAQGSQRCTKPNCIPQCQNGGMCLRPQLCVCKPGSKGKACEQ
KTVSTHPFPAPPGNEPTNGHTTGHTNGHNVVPQRPIPQQVPPNGYASVPPPANNMAQMKL
TVKPAPQLVRPHYIHQHIQQQIRPVPMHPVQSQPYVIKPKYYHTHTTHTQTHVQSQPERP
IPLRVGPNSFHAVGNHTGRIKVVFTPTICKLTCIGGRCHNNCELGNTTTIISENGHATDT
LTAPNFRVVVCHLPCINGGKCSTRDKCQCPPNFTGKFCQMPVQNGHQQHQQHQQAAGGYS
QTQVHSTHTLPLTYSNGQSTVFSPSIVNIHIKHPPEASVQVHQVSQLDNYHNNGHQLKGS
QSGSSSSTSYTYHHTESSQKIQHHGYNVVYPSQHGYQVPQYQPVTSKNTLGRCFQETTGS
QCGKALPGLTKQEHCCGTIGTSWGFHKCQKCPKKPSIPLIDCPQGYKRINSSHCQDLDEC
QLQGVCPNGNCLNTVGSYRCMCKPGYVPDPTLTTCISSTPAIQEEKGACFRLVSSGKQCL
HPVSAQLSKQLCCCSVGKAWGPHCDKCPPPGTAKFKEICPGGMGYTVLPNPPVNKPVTVY
QEPADLLPAYPLPTPERPVEAFGKPEDIIPVATTAPDQELLVPVFSNRPVVEPILPQLSP
GVSTVKIEAAYPEVVERSSPPAPVEILPSNAGQDIAPTQSAEVDECQINPYICGQGICYN
TAEGYTCHCDEGYRLDDAQTTCVDVDECLDSPSLCFGGHCKNTEGNFLCVCPKGFLVDEE
GTSCVDIDECVNRTVCPSGICFNVPGSYNCGSCPNGFLAQGGQCVDVDECQDQQVCTRGH
CLNTEGSFTCQCGPGFRVSAAGDQCDDVDECVEDARPCEALGECVNSMGSYTCNCPQGYQ
QINGTSCRDVDECVEEPEFCSPHGKCLNTEGSYLCVCESGFTANLDTPSCDDIDECGLNE
TLCGPRGFCENRLGSFRCLCDQGYQESQDRQGCVDVNECELLSSVCGEAQCVNVDGSFLC
VCPSGQDYNVMIAKCEPVPTVLSEERKECYYRLNDENLCESVLTSHVTLQECCCTLGAGW
GDNCEVHPCPVNGTDQFNQMCPSGRGFIPSGDLLYGVPTADSYKNADECTLFGQEVCKGG
FCLDTVGSYECYCKTGQDYDPAKLECRDINECLDESVCVGGQCLNTDGSYMCFCTLPMVL
DPNNNRCVFSPEVSEQHEAELIDYQGICWQTVTETLTCTQPLGLNRKTTYTECCCLYGEA
WGMDCALCPPRNTEDYASMCNLPLGGGRRPYGHDALTAGPVHEYEVSPDYSLSPEQQPVL
PFYENEEHPYKAFEGLRAEECGILNGCENGRCVRVQEGYTCDCFDGYTLDLSRMACIDVN
ECSELNNRMSLCKNAKCINTVGSYQCVCLPGFTASDKPNYCVEVTTHQTSSHTQ
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggcttggattaaatggggcctgttattttccctcagtttgtttctctctccggtatgt
gtgtcagcggagcaacagcagggccagagcggcttcaggaggctgtacgtgctccagccc
gggccggggccggggtcgggttcggccggagcggacggcgggctgcgagtcagctccatc
tcgacgcgtcacggcccggcagggcagccgcacacgtataacgtagagctcaccgctaac
ttcggcggccagacccggacccgcaggatggggaaccaagcggcttcagtcccacagttc
agtcagcagcagccagtcgtccgtcagagcggacaggaacagagccagcagaagcagctc
atgaagctgtccggggtgaatgtctgtggagggcagtgctgtcatggatggagtaatgct
cagggatcgcagaggtgcacaaagcccaactgcatccctcaatgccagaacggaggaatg
tgccttaggcctcagctctgcgtctgcaaacctggctcaaaggggaaggcatgcgaacag
aagacagtgtccacacacccttttccagcaccacctgggaatgaacccaccaatggccac
accactggtcacactaatggacataatgtagtaccacagcggcccatacctcagcaagtg
cctcctaatggttacgcttctgtccccccaccagctaacaacatggcgcagatgaaacta
actgtcaagccagccccccagcttgtgcgaccacattacattcaccaacacatccaacag
cagatccggcctgtgcccatgcacccagttcagagccagccctatgtcataaagccgaaa
tactaccacacacacactacacacacacagacgcacgttcagtcccaaccagagaggccg
atccccctaagagtgggacccaactccttccatgcagtgggcaaccatacagggaggatc
aaggtggtcttcacacccaccatctgcaaattaacctgcattggaggcagatgtcacaac
aactgtgagctgggaaacaccaccaccattatcagtgagaatggccatgctacagacacc
ctgacagcacccaacttcagagtagtggtgtgtcaccttccctgtataaatggtggcaag
tgcagcaccagggacaagtgtcagtgccctcccaactttactggaaagttctgccagatg
ccagttcagaatgggcaccagcagcaccagcagcaccagcaggcggcaggcggctacagc
caaacccaggtccactccacacacacactgccactgacctacagcaacggccagagtact
gttttcagccccagtatcgtcaacatccacatcaaacatccacccgaggcctctgtccag
gtccaccaggtgtctcagctggacaactaccacaacaatggacaccagctgaaaggttcc
cagtcaggctcctcctcatctaccagctacacctaccaccacacagagagcagccagaag
atccagcaccatggctacaatgtagtctatcccagccagcatggttaccaggttcctcag
tatcagcctgtcacctccaagaacacactgggccgctgcttccaggagaccacaggcagt
cagtgtgggaaggctctgcccgggctcactaagcaggagcattgctgtggaaccattgga
acatcctggggtttccataagtgccagaagtgtccaaagaaaccatctatccctctgata
gattgtcctcagggttacaagagaatcaacagctctcattgccaagatttggatgagtgc
cagctacagggtgtgtgtcccaatggaaactgtctgaacaccgtgggcagttacaggtgc
atgtgtaaacccggctatgtgcccgaccccaccctcaccacatgcatatccagcacgcct
gccatccaagaggagaagggggcttgcttccgtttggtgagctcagggaagcagtgtttg
cacccagtttctgctcagctgagcaaacagctctgctgctgcagtgtgggcaaagcctgg
ggccctcattgcgacaaatgcccccctccaggaacagctaaattcaaagaaatctgccct
ggtggaatgggctacactgttctaccaaatccacctgtcaataagccagtcaccgtttac
caggagcccgctgacctgctacccgcctatcccctgccaacaccagagagaccagtggag
gcttttgggaaaccagaggacattataccagtagcaacaactgcaccagatcaggagctg
ctagttcctgtgtttagtaataggccagtagttgaacctatcctgccccagctatctcca
ggtgtgtccactgtcaagattgaagcagcctacccagaggttgttgagaggagctctcca
cctgctccagtggagatcctcccatctaatgcaggccaggacatcgcccccacccagtca
gcagaggtggatgagtgccagatcaacccttacatttgtggccaggggatttgttacaac
acagctgagggctacacctgccactgtgatgagggataccgcctggatgatgcccaaact
acctgtgtagatgtagatgagtgtttggatagcccatctttgtgctttggtggtcactgc
aagaacacagagggcaatttcctgtgtgtgtgtccaaagggattccttgttgacgaagag
ggaaccagttgtgttgacatcgatgaatgtgtaaacaggacagtgtgtccctctggcatc
tgtttcaacgtgccaggaagttacaactgtggctcctgtcctaatggcttcttggcacaa
ggaggccagtgtgtggatgtagatgagtgccaggatcagcaggtctgcaccagaggccac
tgcctgaacactgaaggctcctttacctgtcagtgtggcccaggcttcagagtgtctgca
gctggagaccagtgtgacgatgtggatgagtgtgtagaggatgctaggccctgtgaggct
ttaggggagtgtgtcaacagcatgggctcctacacctgtaactgcccacagggataccaa
cagatcaacggcaccagttgcagagatgttgatgagtgtgtagaggagccagagttctgt
tccccccacggaaagtgtctcaacacagaaggatcctatctgtgtgtgtgtgagagcgga
ttcactgccaacctagacacaccctcctgtgatgatattgatgagtgtggcctcaatgag
actctgtgtggccctcgtggtttctgtgagaacagactgggctccttccgatgcctttgt
gaccagggctaccaggagtcccaggatcgccaaggctgtgtggatgtgaatgagtgtgag
ctgctgagcagtgtgtgtggagaagctcagtgtgtgaacgtggatggttccttcctatgc
gtgtgtcctagcggccaggactataacgtcatgatcgccaagtgtgagcctgttcccaca
gtactgtcagaggagcgtaaggagtgctactatcgtctcaatgatgagaacctgtgtgag
agtgtgctgaccagccatgtcaccctgcaggagtgctgctgcacgctgggagctggctgg
ggtgacaactgtgaggtacatccctgtcccgtcaatggcacagaccagtttaaccagatg
tgtccatctggaagaggttttattcccagtggagacttgttgtatggagtaccaactgcg
gacagctacaaaaatgcagatgaatgtacactgtttggccaggaggtgtgtaaaggaggt
ttttgtctggatactgtgggcagctatgagtgttactgcaagactggacaggactacgat
cctgccaaactggagtgcagagacatcaatgagtgcctggatgagtcagtgtgtgttggt
ggacagtgtctgaacacagatggctcatacatgtgtttctgtacacttcccatggtgttg
gaccccaacaataaccgttgtgtcttcagtcctgaggtgtccgagcaacatgaggcggag
ttgatagactaccaggggatctgctggcagacagttacagaaaccctgacttgcactcag
ccactgggtctcaacaggaagaccacttacacagagtgttgctgcctgtacggagaggcc
tggggcatggactgtgccctgtgtccacctagaaacactgaggattatgcatccatgtgt
aaccttcctttgggtggtgggcggcggccatacggtcatgacgcccttactgctggccca
gtgcatgaatatgaagtgagcccagactattcactgtcacctgaacagcagccagttctg
cccttttatgagaatgaggagcatccatacaaggcatttgagggtttgcgagcagaggaa
tgtgggatactgaatggctgtgagaacggacgatgtgtccgggttcaggagggttacacc
tgtgactgctttgatggatacaccctggacctgtcccgcatggcctgcatcgatgtgaac
gaatgttcagaactgaacaatcgaatgtcactgtgtaaaaatgcaaagtgcatcaacaca
gtgggctcctatcagtgtgtatgtctgccagggttcactgcctctgacaaacccaactac
tgtgtggaggtcacaacacaccaaacatcatcacacacacagtga
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integrated database retrieval system
