Lates calcarifer (barramundi perch): 108896044
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Entry
108896044 CDS
T04895
Name
(RefSeq) receptor-type tyrosine-protein phosphatase C
KO
K06478
receptor-type tyrosine-protein phosphatase C [EC:
3.1.3.48
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108896044
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108896044
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108896044
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lcf04090
]
108896044
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
108896044
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
108896044
CD molecules [BR:
lcf04090
]
Proteins
108896044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
DSPc
PTP-SAK
Tc-R-P
Y_phosphatase3
PTPlike_phytase
PTP-NADK
Motif
Other DBs
NCBI-GeneID:
108896044
NCBI-ProteinID:
XP_050933213
UniProt:
A0AAJ8BHM2
LinkDB
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Position
LG17:19405857..19424353
Genome browser
AA seq
1363 aa
AA seq
DB search
MAGLCGLKILLLWACIIGLSKCETGNGNGPDSVSVQTKIQTPHLHTPQQFPLHLRFPLCL
SSPHLQARQQNLLHPQYPLYLSPPHLHTPLAAAPAMSSDTPTAAAQPPFISSAPTSVSPN
QTNNSTTMSATPTTHPNKTNIQTDSDNKTSPAVTQLNTTVTPTTQAPPTTPAPPPQCSYT
VKSIKFGFQINITSSTTGNYNITINEEGRPDTENKSMVQHSSQNSSHEIKHLKPCTEYEH
SVTFIDTSAGRENIHCNSTEKDNKTTNTGKDDIKDATSCIPGYVCYQTDWNITSLQSTPN
KIQDERCGSKTLCVKLGYNDICTDFTTTITSETCGNSSFNFTKNISIDFLNVSEINQTAP
TELPAKINTTLPPNCKSLSIDYSCRENGRVNESKTLSELEPFTDYNCTGQIKDNDGTVKK
TTAPVRFNIKCDFDINTKKSSTNTSIELSSTTTSKNCQQVPQNLLYNCSCSRHPPGYKIT
ANNHPPGGTCHVTGLQPYTNYTCEVQPIYNNKRVPKSKSYSVTEKTKSGIPDPVTNLKVT
VPEHNVIHVKCDHSKNSKGPENKCRVRLITGGVIVDKTDTPNSNLEFRDLSYSTTYTVKV
TVFNGDFESEPKTDTVHTQYNDKAVIGFLIFLIILTSVALLLVVYKIYILKRRTSHDLTE
SMMLISPNDEDNLMPVEPIVAEVLLETYKRKLADEGRLFLAEFQSIPRIFSRYTVKEAKK
PCNVPKNRYVDILPYDYNRVQLTSGNGEAGCDYINASFIDGYKEAKKYIAAQGPKDETVS
DFWRMVWEQQSSIIVMVTRCEEGNRVKCAQYWPSPERETEIFEEFIVKLNSEDHCPDYTI
RHLSLTNKREKNSEREVTHIQFMSWPDHGVPGEPHLLLKLRRRVNAFKNFFSGPIVVHCS
AGVGRTGTYIGIDAMMEGLEAEGRVDIYGYVVRLRRQRCLMVQVEAQYILIHQALLEHNQ
FGETEITLSELHSTMNTLKQKNSDNEPTLMEEEYERLPVYKNWRTFNTGITEENKKKNRT
SSVIPYDYNRVLLKIDEGRSHESDPDEDEEEESSDEEDEESTKYINASHLDGYWGPRAFI
AAQTPLPDTMADFWLMLYQKKVSTIVMLSDISEGDTESDSVYWDKDKKIFGDLEVEVAST
DITPTFITRNLLVRHVKRKDSRSVKQFQFLKWGNKELPENPQDLTDMIKELKNSCGSKPQ
NMVVHCNDGSSRTGIFCALCTLLDSAKTEKLVDVFQVVKTLRKERQEMVSSLEQYQFLYD
ALEGVFPVQNGEVKAVQASAADSVQIVNETKAAEQPAEEKAEQPASAASTTSNDQQAPAE
STPLVADAGKEDKKEGSDKESSTPTETSPLEDTSNGPTVTVEV
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtctctgtggtctcaagatcctgctgctctgggcctgcatcatcggattgagc
aaatgtgaaactggaaatggaaatggaccagactctgtttcagtccagactaaaattcaa
acccctcacctccacacaccacagcagtttccacttcaccttcgctttccactgtgtctg
tcatctcctcacctgcaagcacggcagcaaaatctacttcaccctcagtacccattgtat
ctatcaccccctcacctccacacaccactggcagcagctcctgccatgtcttcagacact
ccaactgctgccgcccaacctccattcatctcgtcagcccccacctcagtctccccaaat
cagacaaacaattcaactaccatgtctgccactcctaccacacacccaaacaaaaccaac
atccaaacagactctgacaacaagacctcacctgcagtcacccagctcaacaccacagtg
actcctaccacccaagctcctccaaccactccagctccacctccacagtgttcttacact
gtaaaatccatcaagtttggcttccagattaacattacaagctctaccactggtaactac
aacataaccattaatgaagaaggccgaccagatactgaaaacaaatccatggttcagcac
tccagtcaaaactcatcacatgaaatcaaacacctgaaaccctgtactgaatacgagcac
tctgtgacattcattgatactagtgctggcagagaaaacatccactgtaacagcactgaa
aaggataataaaacaaccaacacaggtaaagacgacattaaagatgccaccagctgcatc
cctggatatgtttgttaccaaactgattggaacatcacctctttacaatcaacaccaaat
aagattcaagatgagcgatgtggcagtaaaacactctgtgtcaaacttggttacaatgac
atttgcacagattttactacaactatcacatcagaaacctgtggaaactcttcctttaac
ttcaccaaaaacatctctatcgatttcttgaatgtaagtgaaataaatcagactgctccc
actgaacttcctgcaaaaataaacacaacattacctccaaactgtaaaagcctctccatt
gattacagctgtcgggaaaatggcagagtcaatgagtctaagactttgtctgagctggaa
cctttcacagactacaactgtactggtcagatcaaggacaacgatggcaccgtaaaaaaa
accacagctcctgttcggttcaacattaaatgtgattttgatatcaacacaaagaaaagc
tcaaccaatacatccattgagttgagttcgaccacaaccagtaagaactgtcaacaggtc
cctcaaaaccttttatacaactgcagttgtagccgtcatccccctggttacaagattaca
gctaacaaccatccaccaggaggaacatgtcatgttactggactacaaccatacactaat
tacacctgtgaagtccaacccatctataacaacaagagagttcccaaatcaaaatcatat
tcagttacagagaaaactaagagtggaataccagatcctgttactaacctgaaggtgaca
gttccagagcataatgtgattcatgtaaaatgtgatcattctaaaaactctaaaggacct
gaaaataaatgcagagtgcgacttattactggtggagtcattgtggataagactgacaca
ccaaattctaaccttgaattcagagatctgagctactctacgacctacacagtgaaggtg
actgtttttaatggagactttgagagtgagcccaagacagacacagttcacactcagtat
aatgacaaagctgtgattgggtttctcatcttcctcatcatcctcacatctgtggctctg
cttttggtcgtctacaagatctacattttgaagcgcaggacgtcccatgacctgactgaa
agcatgatgcttatttcaccaaatgacgaggacaatctgatgcctgttgagcctattgta
gcagaagtcctgctggaaacctacaagaggaagctcgctgatgagggaagactgttcctg
gctgagtttcagagcatcccaagaattttctcgaggtacacagtgaaagaggccaaaaaa
ccctgcaacgtccccaagaaccgctacgtggacatcctgccctatgattataaccgtgtc
cagctgacctcaggaaatggcgaggcaggatgtgactacatcaacgccagcttcattgat
ggatataaggaagccaagaagtacattgctgctcaaggtccaaaggatgagactgtgagt
gacttctggaggatggtctgggagcagcagtcgtctattatcgtcatggtaactcgctgt
gaagagggaaacagggtcaagtgtgcgcagtactggccgtctcctgagagagagactgag
atctttgaggagtttatagtgaagctgaactcagaggaccactgtccggattataccatc
cgccatctcagcctaactaataagagggagaagaactcagagagggaggtgacccacatc
cagttcatgagctggccagaccacggtgtcccaggggagccacacctcctcctgaaactg
aggcggcgtgttaatgctttcaagaatttcttcagtggcccaatcgtggtccactgcagt
gctggagtgggaaggacaggcacctacattggcattgatgccatgatggagggtctggag
gcagagggcagagtggacatttatggttacgtggtcagactccgcagacagagatgtctc
atggttcaagtagaggcccagtacatcctgattcaccaggctctgctggagcacaaccag
tttggagagactgagatcactctgtctgagctccacagcacaatgaacacactcaaacag
aaaaactcagacaatgaacccaccctaatggaggaggagtatgagcgactccccgtctat
aaaaactggaggacattcaacacagggatcacagaggaaaacaagaagaagaatcgcact
tcatctgtcatcccatatgactacaaccgagtgttgctgaagatagatgaaggacgcagt
catgaaagtgaccctgatgaagatgaggaggaagagtcatcagatgaagaggatgaagaa
tctactaaatacatcaatgcctcccacttagatggctactggggcccacgtgccttcatc
gcagcacagactcctctgccagacacaatggccgacttctggttgatgctttaccagaag
aaagtgtccactatcgtcatgctctcagacatcagcgagggggatacggagtctgactct
gtttactgggataaagacaagaagatatttggagacttagaggtggaggttgcaagcaca
gacatcactccaacttttatcacccgcaacttgctggtccgtcacgtcaagaggaaagac
agtcggtcggtgaaacagttccagttcctgaagtgggggaacaaagagctgccagagaac
cctcaagatctcacagacatgatcaaggagctcaagaacagctgtggcagcaaaccacag
aacatggtggtccactgcaatgatggctcgtcccgtacagggattttctgtgctctgtgc
accctgctggacagtgcaaagactgagaagttggtagatgttttccaggtggtcaaaacc
ttacgcaaggagagacaggaaatggtctccagcctggagcagtaccagttcctgtatgac
gccctggagggggtcttccctgtccagaatggggaagtgaaagcagtacaggcctctgca
gctgactccgtccagattgtcaatgaaaccaaagcagcggagcagccagctgaggaaaaa
gctgagcagccagccagcgctgccagcactaccagcaatgaccagcaggcgccggcagag
agcacccctctggtggccgatgcagggaaggaagacaaaaaagaggggtctgacaaagag
tccagcactcccacagagacctcaccactggaggacaccagcaacggtcccactgtcacc
gtggaggtctga
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integrated database retrieval system
