Lates calcarifer (barramundi perch): 108896967
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Entry
108896967 CDS
T04895
Symbol
ptprfa
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X7
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
lcf04520
Adherens junction
lcf04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108896967 (ptprfa)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108896967 (ptprfa)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
108896967 (ptprfa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108896967 (ptprfa)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
108896967 (ptprfa)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
108896967 (ptprfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
fn3_2
ig
Fn3_VIN3
Interfer-bind
PTP-SAK
Tc-R-P
V-set
DSPc
Y_phosphatase3
PTPlike_phytase
C2-set_2
PTP-NADK
Ig_C17orf99
Fn3_PTPRU
Fn3_ELFN
Insulin_TMD
TMEM154
Motif
Other DBs
NCBI-GeneID:
108896967
NCBI-ProteinID:
XP_018551846
UniProt:
A0A4W6C2N8
LinkDB
All DBs
Position
LG17:complement(748545..1093066)
Genome browser
AA seq
1896 aa
AA seq
DB search
MDLRFRRLSSLTRGALHLLLLARLVLLSHTESMPSFIKSPDDQTGISGGVASFVCQAVGE
PKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSVGEINTS
AKLTVLDEDQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIYWFKDFLPVDINS
SNGRIKQLRSGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRVRRVPPRFSIPPT
NHEVMPGGSVNLTCVAVGAPMPYVKWMTGELELTREEEMPIGRNVLELTNIRQSANYTCV
AISSLGMIETTAQIIVKALPKPPTSLIVTETTATSVTLTWDSGNPEPVSYYVIQYRAKLS
DNGFQEVDGVATTRYSIGGLSPFSEYEFRVMAVNNVGRGPPSGIVDTRTSEQAPSSPPLH
VQARMLSSSTMLVQWEPPEEPNGQIRGYRIYYSSLHDAPLSAWQKHNTDDSQLTTISGLT
TDITYSLRVLAFTSVGDGPPSDVLQIKTQQGVPAQPSGFEAEAELDSRIMLSWLWPVQEP
IIGFELLYWEANNPTDKHHVTFDPAGSYAVDGLKPDTVYMFSLAARSDMGLGVFTQPIEA
RTAQSTPSAPPQEVHLLSLTSTSIKVSWVAPPTDSRHGEIVRYSLAYQALTGEDMERHQV
SGIGADVTSYVLEDLEKWTEYMVWVRAHTDVGPGPESPAARIRTKEDVPGAPPRKVEVDA
VNSTALRVTWKPPLSVKQHGQIRGYQLVYSRLENGEPHGQPVIVDVSLPEAQEAIITGLL
PETTYSLTVAAYTTKGDGARSKAKVVTTTGAVPGKPTMMISTTIGNTALIQWQPPKEMVG
EHVGYQLQFKRAEEEAYTIKDFRKTDDHFTVTGLYKGATYIFKLCAKNRAGNGEEYVKEI
STPEDIPSSYPQNLSVVGLTATSTQLAWDPPPLAERNGKIVKYIVVYRDINSQHNNTNST
TETQMTVQGLQPDTTYDIRVQAFTSKGGGPISPSIQSRTMSTSMPVFTKNFGVKAVTKTS
VLLTWEVPETYKSQVPLKILYNQQSLEVQGNLKRKLITQLQPDTEYSFVLMSRGNSAGGL
QQQVSIRTAPDLLKMRPVQYQHDVEEGGRVTISLPRVPAGASVRWYYIVVVPVTPASLSR
WENPEDMDIHELLEAGADSSLQRKRRQSQDFLQPYIAAKLDALPEIFTLGDEKKYNGYYN
KPLPGQQHYRCFVLADLTDHESQRTFAASPFSEPIKVKLYSGMTRQTEDPEMLWVMGPVL
AVILIIIIVIAILLFKRKRTSPAKDEHMAGVKDSLLAHSSDPVELRRLNYQTQGMREHPP
IAISDLADHIERLRANDGLRFSQEYESVDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSR
VILTPVDGVPGSDYINGNYIDGYRKQNAYIATQGPLPETLSDFWRMVWEQRTCTIVMMTR
LEEKSRVKCDQYWPSRGTETFGMIQVTMLDTVELATYNVRTFALYKNGSSEKREVRQFQF
MAWPDHGVPEYPTPTLAFLRRVKACNPPDAGPMVVHCSAGVGRTGCFIVIEAMLERMKHE
KTVDIYGHVTCMRAQRNYMVQTEDQYIFIHEALLEAATCGNTEVPARNLYAHIQKLTQIP
PGETVTAMELEFKKLANSKAHTSRFISANLPCNKFKNRLVNIMPFESTRVCLQPIRGVEG
SDYINASFIDGYRQQKAYMATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQ
YWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKT
GEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDLFQTV
KMLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagattcagacggctgtcgtctctcaccaggggagctcttcatctcctgctg
ctggccagactggtgctgctttctcacacagagagcatgcccagcttcatcaagtcaccc
gacgatcagacggggatatcaggaggagtggcgtcattcgtatgccaggcagtgggtgag
cccaaacctcgcatcacctggatgaagaaagggaagaaagtcagctctcagcgctttgag
gtgattgagtttgatgatggctcgggctctgtactacgtatccagcctttgaggacccac
cgtgatgaagccatttatgaatgcacagccaccaacagtgtgggagagatcaacaccagt
gccaagctcacagtcttagacgaggaccagatccctcatggcttccccactatagacatg
gggccccagctcaaggttgtagagagaacacgtactgctacaatgctgtgtgcagccagt
ggcaaccctgacccagagatctactggttcaaagacttccttcctgtggacatcaacagc
agcaacgggcgcataaaacagctgcgttcaggagcacttcagattgagaacagcgaggag
tctgaccagggcaagtacgagtgcgtggcagtcaacagcgccgggactcgctactcggct
ccagctaacctttatgttcgagttcgtcgtgtgcctccccgtttctccatcccccccacc
aatcatgaggtgatgcccggcggtagtgtcaacctgacctgcgtggcagtcggcgccccc
atgccttatgtcaagtggatgaccggtgagctggagctgacccgagaggaggagatgcct
attggacgcaacgtcctggagctcaccaacatccgccagtctgccaactatacctgcgtg
gccatatcctccctgggaatgatcgagaccacagcccagatcattgtaaaagcactgccc
aagccacccacttccctcattgtgacagaaaccacagcaaccagtgtcaccctgacctgg
gactctggcaacccggaaccagtgtcttattatgtgatccagtaccgtgccaaactgtct
gacaatggcttccaggaagtagatggcgtagccaccacccgatacagcatcggcggcctt
agccccttttctgaatatgagtttcgtgtcatggctgtcaacaacgttggccggggcccc
cccagtggtattgtggacacccgtaccagtgagcaagcaccctcatcgcctcctcttcat
gtccaggcacgcatgttgagttccagcaccatgttggtccagtgggaacctccagaggag
cccaacggccaaatccgaggctacaggatctactacagctccttgcacgatgctccgctc
agcgcttggcagaaacacaacacagatgacagccagctcaccaccatctcaggcctgacc
acagatatcacttatagcctgagagtgctggccttcacctctgtgggagacgggcctccc
tctgatgttctgcagatcaagacccagcagggagttccagctcagccgtctggttttgag
gctgaggctgagctggattcacgcatcatgctgtcatggctttggcctgttcaggaaccc
atcattggctttgagctgctctactgggaagccaacaatcccacagacaagcatcatgtc
accttcgacccagcaggctcctatgcagtagatggtctaaagccagacacagtctacatg
ttttccctggcagctcgatctgacatgggtttaggagtctttactcagcctatcgaggct
aggaccgcccagtccacaccttcagcccctcctcaggaggtacacttgctaagcctgacc
tccaccagcatcaaggtgagttgggtggcaccgcccacagacagccgccacggggagatt
gtgcgctactccctagcctaccaagcactcacaggggaggacatggagcgtcaccaggtg
tcaggaattggtgcagatgtcaccagctacgtgctggaggacctagagaagtggacggag
tatatggtgtgggtgagggctcacactgatgttgggcctggcccagaaagccctgcagcc
cgcatcagaaccaaggaagatgtgcctggtgctcctcccaggaaggtggaggtggacgct
gtcaactccactgccctcagggtgacctggaagcctcccctatctgtgaagcaacatggc
cagatcagaggctaccagctggtctactccaggctagagaatggagagcctcacggccag
cctgtcatcgtggacgtttccctccctgaagcccaggaggccattataacaggtctgctt
ccagagactacctactctttgactgtggctgcatataccaccaaaggcgatggagctcgc
agcaaggccaaggttgtcaccaccacaggagcagtgcctgggaagcccactatgatgatc
agcactaccatagggaacactgctctgatccagtggcagccccctaaggagatggtgggg
gagcatgtgggataccagctgcagttcaagagagcagaggaggaagcttataccatcaaa
gacttcagaaagacagatgaccatttcacagtcacaggcctctacaaaggagccacttac
atcttcaaactgtgtgccaaaaatcgagcaggcaatggggaggaatatgtgaaggagatc
agcacccctgaggacattcccagcagctacccccagaatctgagtgtggtaggcctgacc
gccacctccacccagctggcctgggacccccctcctctggctgagaggaatgggaagatt
gtgaagtacatagtggtgtatcgagatatcaatagccagcacaacaacaccaacagtacc
acagaaacacagatgactgtccaaggtttgcaacctgacacaacctacgacatcagagtc
caggctttcaccagtaaggggggaggccccatcagccccagcatccagagcaggaccatg
tccacctccatgccagtgttcaccaagaactttggtgtgaaggctgtgacgaaaacctct
gtcctgctgacctgggaagtgccagaaacctacaaatctcaagtgcctctcaagatcctg
tacaaccaacagagtttggaggttcaaggcaacctgaagaggaaactgatcacacagctg
cagccagatactgaatattcctttgtgctgatgagtcgggggaacagtgctggtggcctc
cagcagcaggtttccatccgaacagctccagacttgctgaagatgagacctgttcaatac
caacatgatgtagaggagggtggcagagtcaccatcagtctgccgagggtccctgctgga
gccagtgtcaggtggtactacatagtggttgtccctgtcaccccggcttctctgagcaga
tgggagaaccctgaagacatggacatacatgagctccttgaggccggtgctgacagcagt
ctgcagagaaagaggagacaaagccaagacttcctgcagccctacattgcagccaagctg
gacgctctgcctgagatcttcactctgggtgatgagaagaaatacaatggctactacaac
aaacccctccctggccagcagcattatcgctgctttgtcctggcggacctgacggaccac
gagtctcagagaacatttgcagccagccccttttctgagcccatcaaggtgaagctctac
agtgggatgactcgacaaactgaggacccagagatgctgtgggtgatgggtccagtcctg
gctgtcattctcatcatcatcatagtcattgctattctactcttcaagaggaagagaaca
tctccagccaaggatgagcacatggcaggggtcaaggactcactgttggcccactcttca
gaccccgtggagctgaggagactcaactatcagacacaagggatgagggaacatcctccc
attgcgatctctgacctggcagaccacatagagagactcagggccaacgacggtctgcgc
ttctctcaggaatacgagtctgttgatccaggacagcagttcacctgggagcactccaac
ctagaggtcaacaagccaaagaaccgctatgcaaatgttatcgcctatgaccactccagg
gtcatcctcacacctgtggatggagttccaggtagcgactacatcaacggcaattacatt
gatggctacaggaagcagaatgcttacattgccacgcaggggccgctgccagagacactg
agtgacttctggaggatggtgtgggagcagagaacctgcaccattgtcatgatgacccgt
ctagaggagaagtcacgggtgaagtgtgaccagtattggcccagtcgaggcacagagacc
tttggaatgattcaggtgaccatgctggacactgtggagctggctacgtacaatgtacgc
acattcgccctctataagaatggctcgagtgagaagagagaggttcgacagttccagttt
atggcctggcctgaccatggagtgcctgagtatcccaccccaacactggcctttctacgc
agagtcaaagcctgtaaccctccagacgctggacccatggtggtccactgcagtgctggt
gtgggccggacgggctgcttcattgtcattgaagccatgctggagaggatgaaacatgag
aagacggtggacatttacggtcatgtgacgtgtatgcgagctcagaggaactacatggtg
cagacagaggaccagtacatattcattcacgaggccctgctagaagctgcaacatgtggc
aacacagaagttcccgcccgcaacctttacgcccacatccagaagctcacccagatccct
cctggagagactgtcaccgccatggaactggagtttaagaaactggccaactctaaagca
catacctcaagattcatcagtgccaacctgccgtgtaataaattcaagaaccgcctggtg
aacatcatgccttttgagtccacccgtgtctgcctgcagccaatcagaggagtggagggc
tcagactacatcaatgccagcttcattgatggatacaggcagcagaaagcatacatggcc
acccagggcccgttagccgagaccactgaggacttctggagaatgttgtgggaacacaac
tccaccattgtagtcatgctcaccaaactccgcgagatgggaagggaaaaatgccatcag
tactggcctgctgagcgctctgcacgttaccagtactttgttgtggatcccatggctgag
tacaacatgcctcagtatatcctgagagaattcaaagtcacagacgccagggatggtcag
tcgaggaccatcaggcagtttcagttcactgactggccagagcaaggagtgccaaaaact
ggggagggtttcatcgacttcattggccaagttcataaaactaaggagcaatttggacaa
gatggaccaatcactgtgcattgcagtgctggtgttgggcggactggtgtgttcatcacc
ctgagcattgttctggagaggatgaggtacgagggagtggtcgacctgttccagaccgtc
aagatgctccgtactcagaggccagccatggtgcagacggaggaccagtaccaactgtgc
taccgggctgctctggagtacctgggaagctttgatcactatgcaacataa
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integrated database retrieval system
