Lates calcarifer (barramundi perch): 108898087
Help
Entry
108898087 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: plexin-D1
KO
K06822
plexin D
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
108898087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plexin_cytopl
TIG
Plexin_RBD
Sema
PSI
TIG_plexin
PSI_PlexinA-B
Motif
Other DBs
NCBI-GeneID:
108898087
NCBI-ProteinID:
XP_050927263
UniProt:
A0AAJ8B8N2
LinkDB
All DBs
Position
LG6:18053104..18114571
Genome browser
AA seq
1911 aa
AA seq
DB search
MPPSIEIAVLLLGVLTLETRRSASALHIQQAFASPNQTNNFVVDPVSRKVYLATVNTVYQ
LNGTLILEVEKRTGPVEDNLLCHAPQLPQAPCEHPKSLTDNYNKLLKLDREQGVVVVCGS
VYQGFCELRKMENISEIAVEFPPQGEKTVFPSMLNIAANHPNASTVGLILKSHGGNTRLL
VGATYTGAGTQFFPKNHSKEDLRFENTPEIAIRSLNIKDLSHLFTYDINPSEDNVFKIKQ
EVKTKNKLNFVHAFIQKSYSYIAFNNDAKTGHKESQPNSILARICLDTENPRKSSGSESK
KLTESYIQMPLQCGFNGNIYNRLLSVYPAEIHTDEGQGATEPYLFGVFSKEKPTDRKSAL
CAFKFGDIEEEIRQGRWNCSNSPSSDVQVLDSVIQGSGAACILKGNLVLQSEQLDCGAAH
LQHPLALRRSLRAIPLIEYPGLSSVSVDNVHNHTVVFLGTSNGRLRKLTLLPNMTLGNQW
KLKLPASEAVHHIMTFDPNDRNFLYLMTSHHMLRVRVAECDQWKSCSDCLGAGDAHCGWC
TLENRCTIQKECAQGLLARSWISMGEGPQQCPSMTLTPPEISISADIKDVGILINGSVPD
LVGSRVECEYGPGVSTAVTVHLDYGPAQIQTCPLLPRENYQPIPPGTDHLTVSVAIKVNG
TSVVSGSFIIYDCERTGAIHPKTSCVSCLSTRWKCYWDQENHLCVSSKDESKPNLLENAA
SCPSLVASEVPPSPSEMAQDFTLSLSNIQEGEELECDFGTEQRYEAIWLNSSTVKCSGVT
LSTNQWSQVYHLNLRRRGFFSGRREDIFVDSPQPMKVEVYNCGVGSSDCSQCWGREDQGH
LCGWCENSCKPRDDCQPIRAQCPAPEIHKIFPLRGPVEGGTLLTIEGRNLGRRAGAVKVS
IGDVPCVLLPELYTVSVELVCVTGRSEYDRTDIVQVNVDQSGMGTSKESFSYLVPKLLSM
EPRKGSRAGGTRVTIMGEHLDIGSEVRVKVNNTEKCTITEKTDETIECTMPPALQVNTES
VTVCVEFENLPCQSAELSTTYTYEKNPIISFIHPKKSYLSGGRTITVTGQGFDLVQSVTM
QVLGIGETPCTVFSSSMITCLSPESTQSQQTSVQFFLNGVLYIGDSPFSSDYDEPEEEEE
ETHKGQFLLEYVEDPQFFTANKEKLIKHHPGEPLTLIINKGPSDLELVPEEYSVMIGSYP
CNISFHNDQLFHCTINGLLSSSERELPVTVQVGNFRHTIAKVQLGGSELAIVVSIVVCCV
LLLLCTVALVVYCTKSRRAERYWQKTLLQMEEMESQIREEIRKGFAELQTDMTDLTKELN
RSQGIPFLEYKQFVTRTFFPKMCSDYEKSLVQPVYENDALGPRALPETHPLLQDWQVRGX
ASRPPTQLRPNIEEGITLFSTLLNNKHFLITFVHALEQQKDFAVRDRCSLASLLTIALHG
KLEYYTSIMKDLLVDLIDASASKNPKLMLRRTESVVEKMLTNWMSICMYSYLKETVGEPF
FLLLCAIKQQINKGSIDAITGKARYTLNEEWLLRENIEAKPQNINVSFQGCGMDSLSVRV
MNTDTICQVKEKIIEAFYKNLPFSQWPRAEDVDLEWFDSGSNSKLLQDLDNSSLMEDGRK
KLNTVFHYQIPEGASLAMSMKDKKENTLGRVKDLDTEKYVHLVLPHDELMETKRSHRQSH
RKKVLPEIYLTRLLSTKGTLQKFLDDLFQAILSIPPDRPPLAVKYFFDFLEEQADKRGIT
DPDTLHIWKTNSLPLRFWVNILKNPQFVFDIDKTDHMDACLSVIAQAFIDACSISDLQLG
KDSPTNKLLYAKEIPEYKKRVQCYYQQIQEMAPLSEQEMNAHLAEESRKYRNEFNTNLAL
TEIYKYAKRYRNQVVNALESNPTARRTQLHHKFEQVIALVEDNIYECCSEA
NT seq
5736 nt
NT seq
+upstream
nt +downstream
nt
atgcctccttcgatagagatagctgttctgctcctcggcgtcttgactttggagacgcgc
cggagtgccagcgcgctacacatccaacaggcgttcgcgtctccaaatcagaccaataac
ttcgtggtggacccggtgtccagaaaggtctacctggccaccgtcaacaccgtctaccag
ctgaacggcaccttgatcctcgaggtggagaagaggaccgggccggtggaagacaacctg
ttgtgccatgcgccacagctgccccaggctccgtgcgagcatcctaaatccctcactgac
aactacaacaagctccttaagctggaccgagagcaaggggtcgtggtggtgtgcggatcc
gtttaccagggcttctgtgaactcagaaaaatggagaatatttcggagatagcggtggag
ttcccaccccagggcgagaagactgttttccccagcatgctcaacatcgctgccaatcac
ccgaacgcatccaccgttgggctcatcctcaagagccacgggggaaacacccggctgctc
gtcggggccacgtacacaggggctggtacccagtttttccccaagaatcacagcaaggag
gacctgcgcttcgagaacaccccggagatcgccatccgctccttgaacatcaaggattta
tcgcaccttttcacctatgacattaacccctcggaggataatgtatttaagatcaaacaa
gaggttaaaaccaaaaacaagctgaacttcgtgcacgctttcatccagaagtcttactcc
tacatcgcctttaataatgacgcgaaaacgggccacaaggagagccagcccaacagcatc
ctcgccaggatatgtctggataccgagaacccccgaaaatcctccgggtcggagagcaag
aagctcaccgaatcctacatccagatgcccctacagtgcggatttaacgggaacatttac
aaccggcttctatccgtgtacccggcggagatccacacggacgaagggcagggcgccacg
gagccttacctgttcggagtgttttccaaggagaagccgacggatagaaagtctgctctg
tgcgctttcaagttcggagacatcgaggaggagatccgacagggccgctggaactgctcc
aactcccccagcagcgacgttcaagtgctggacagcgttatccagggctccggggcggcg
tgtatcctgaagggaaacctggtgttgcagtccgagcagctggactgtggtgcggcccac
ctgcagcaccctctggccctacggaggtccctgagggccattcctctgattgaataccca
ggccttagttcagtctctgtagacaatgtacacaaccacactgtggtttttctgggaacc
agtaatggacgacttcgtaagctgaccctcctgccgaacatgaccttgggcaatcagtgg
aagctgaagctgccagccagtgaagcagtccaccacatcatgacctttgaccccaacgac
aggaacttcctttatctcatgacctcgcaccatatgctgagggtgagagtggctgaatgt
gaccagtggaagagctgcagtgactgtttgggagcaggcgacgcccactgtggctggtgt
actctggagaacagatgtaccatccagaaggagtgcgctcaggggctgttggcacgctcc
tggatcagcatgggcgaaggcccccagcagtgtccatccatgaccctgacacccccagag
atcagcatctctgcagacatcaaggatgtcggcatcctgataaacggcagcgttcctgat
ctggtcggctcccgggtggagtgtgaatatgggccgggtgtttctacagctgtcacggtg
cacctggactacggtcccgctcagatccagacctgtcccctgctccctcgagaaaactac
caaccaatcccccctggcacagatcatctgactgtttctgtggcgataaaagtgaatggc
acatctgtggtatctgggagcttcataatctacgactgcgagaggacgggagcaatacac
cccaagacatcatgtgtgagctgcctgagcacaaggtggaagtgttactgggaccaagag
aaccacctttgtgtctccagtaaagatgagtcaaagcccaacctgctggagaatgctgct
tcctgtcccagcctggtcgcctcagaagttcctccatcgccatcagaaatggcccaggac
ttcaccctatccctgagcaacatccaggagggggaagagctggagtgtgactttgggaca
gagcagcgatatgaggcaatatggctgaacagctcgactgtcaagtgcagtggagtgaca
ctgtccactaatcagtggagtcaagtttaccacctgaacctgaggaggagaggattcttt
agtgggcgcagggaggatatttttgtcgacagccctcagcccatgaaagtggaggtgtac
aactgtggagtgggtagttcagattgttcccagtgctggggccgggaggatcagggccac
ctttgcggctggtgtgaaaacagctgtaagccgcgggacgactgccagccaatcagggct
cagtgtccagctcctgagatccacaagatcttccccctgaggggtccagtggaaggaggc
accctgctgacaatagagggcaggaacctgggccggagggctggagcagtgaaggtctct
attggcgatgtgccatgtgttctcctgcctgagctctacactgtctctgttgagctggtg
tgtgtcactgggaggtccgagtatgacaggaccgatattgtccaagtgaatgtggaccag
agcgggatgggcacgtcaaaggagagcttctcatacttggtcccaaagctgctgtccatg
gagccgaggaagggctctcgtgctggaggaaccagggtgaccatcatgggggaacacctg
gacattggttctgaggtcagagtcaaggtcaacaacacggagaaatgcaccatcacagag
aaaacagatgaaaccattgagtgcaccatgcctccagccttgcaggtaaacactgagtct
gtgacagtgtgcgtggagtttgaaaaccttccctgtcagagtgcagagctcagtaccaca
tacacttacgagaagaaccccatcatcagcttcatccatcccaaaaagagctacctaagt
ggtggcaggaccatcacagtgacgggccagggttttgatctggtgcagagtgtcaccatg
caggtgctgggaattggagaaacgccctgcacagtgttctcctcctccatgatcacctgc
ctgtccccggagtccacccagtcccagcagacctcggttcagttcttcctgaacggagtc
ctctacatcggagacagccccttctcctctgactacgacgagccagaggaagaggaggag
gagactcacaaaggtcaattcctgttggagtacgtggaggaccctcagttcttcaccgcc
aataaggagaagctgattaaacaccaccccggagagccgctgacactcatcatcaacaaa
gggccgagcgatctggaactggtgccggaggaatactcggtgatgattggctcctatccc
tgtaacatcagcttccacaacgaccagctgtttcactgcactatcaacggattgctgagc
tccagcgagagggagctacctgtcactgttcaagtggggaacttccgtcacaccatcgcc
aaagtgcagcttggtgggagcgagctggccatcgtggtatccattgtggtgtgctgcgtg
ctgctgctgctgtgcactgtggctctcgtagtgtactgcacaaagagtcggagggcggaa
cgctactggcagaaaactctactccaaatggaggagatggagtcccagatcagagaggag
atccgaaaaggctttgcagagctgcagacggacatgacagaccttaccaaggagttgaat
cgcagccagggcatcccctttttggagtacaaacagtttgtcacacgcacgttcttcccc
aagatgtgctcagattatgagaagagtctggtccagcccgtctacgagaatgatgctctg
ggcccccgagcgctgccagagacccacccgctgctgcaggactggcaggtgaggggttaa
gccagtaggccaccaacacaactgaggcctaacatcgaggagggcatcaccctgttctcc
actcttcttaataacaagcacttcctgatcacgtttgtccacgccttggagcagcagaag
gactttgctgttcgggacagatgcagcctggcgtctctgctcaccatcgccctccatggt
aaactggagtactacaccagcataatgaaagatctgctggtggacctgattgacgcctcg
gcttcgaagaaccccaaactgatgctgcgccgcactgagtctgttgtggagaaaatgctg
accaactggatgtccatctgcatgtacagctacctcaaggaaacagtgggtgagcctttc
ttcctgctgctgtgtgcaatcaagcaacagatcaacaagggatctatagacgccatcaca
gggaaggcccgctacaccctcaatgaggagtggctgctccgcgagaatattgaggccaag
ccacagaacatcaacgtgtccttccagggctgtggcatggactcactgtctgtcagggtc
atgaatacagacacaatctgccaggtgaaggaaaaaatcatagaggccttttataaaaac
ctgccattctcccagtggccccgagcagaggatgtagacctggagtggtttgactctggt
agcaacagtaaacttctgcaagacctggacaactcctcgttgatggaggatggccgaaag
aagctgaacacagtcttccattaccagatcccagagggggcatcactggccatgagcatg
aaagacaagaaagagaacaccctggggagagtcaaagatctggatacagagaagtatgta
catttggtcctacctcacgatgagctaatggagaccaagaggtcgcacagacagagccac
cgcaagaaagtcctgcctgaaatctacctgacacgcctgctgtccaccaagggaactctt
cagaagttcttggatgacctctttcaggccatccttagcatccctccggaccgcccccct
ctggcagtcaaatatttcttcgacttcctggaagagcaggctgacaaacggggcatcaca
gacccagacaccctgcacatctggaaaaccaacagtttacctctgcgtttctgggtgaac
atcctgaagaatcctcagtttgtgtttgacatcgataagacggatcacatggacgcctgc
ctgtctgtcatcgcccaggcttttatagatgcctgctcgatttctgacctacagctaggc
aaggactcccctaccaacaagctgttgtatgccaaggagatccctgagtataagaagaga
gtgcagtgctactaccaacagatacaggaaatggcaccactcagtgagcaggagatgaat
gctcacctggctgaggagtcacggaaatacagaaacgaattcaacaccaacctggccttg
acagaaatctacaaatatgccaaaagatacagaaaccaggtggtgaatgctctggagtct
aaccccactgcacggcgcactcagctgcaccacaagtttgagcaggtcattgccctcgtg
gaggacaacatctacgagtgctgcagcgaagcctga
DBGET
integrated database retrieval system
