Lates calcarifer (barramundi perch): 108898747
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Entry
108898747 CDS
T04895
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03440
Homologous recombination
lcf03460
Fanconi anemia pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108898747
09124 Replication and repair
03440 Homologous recombination
108898747
03460 Fanconi anemia pathway
108898747
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108898747
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108898747
03036 Chromosome and associated proteins [BR:
lcf03036
]
108898747
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108898747
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108898747
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108898747
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108898747
Multi subunit type E3
BRCC complex
108898747
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108898747
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108898747
BRCA1-A complex
108898747
BRCA1-B complex
108898747
BRCA1-C complex
108898747
BRCA complex
108898747
FA (Fanconi anemia) pathway
Downstream FA components
108898747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
RTT107_BRCT_5
zf-C3HC4_4
zf-RING_UBOX
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_3
zf-Nse
zf-RING_5
zf-MIZ
zf-ANAPC11
zf-RING_4
zf-PARP
TRAF3_RING
PTCB-BRCT
zf-RING_10
zf-rbx1
Baculo_IE-1
RING_ZNF598
Motif
Other DBs
NCBI-GeneID:
108898747
NCBI-ProteinID:
XP_018554284
UniProt:
A0A4W6C750
LinkDB
All DBs
Position
LG23:10481314..10504631
Genome browser
AA seq
1411 aa
AA seq
DB search
MNSPKATDVKKGISVLWETLQCPICLDLMTVPVSTKCDHQFCKFCMLKLLDNSKQNRANC
PVCKTKITKRSLQESPGFQRLVTGLQDMIQAYEQDTSTNYFTGMSLQEKQSGVTDAEATK
HPPNTSSGDTPLTDLDNMENADDADLPRSHSSTIAAQNGFARLMGLEDSAPLTTENEGLD
SGLGDAPLTSDKKMHSSTDNLEPVETEMSEIVEKSTSTHKTRGKRRTGRLENNPLHPVLI
SDETEYQSLRKSSRKKQKKDSERDEILEQKKKKSLEKVAEWLMKVPTEGSLELEKPDGDA
DDSDSCSSASTIDVKQHISDVNEKREDRAKALEEQVFGAVYKRERRGNRSSSLFVELPTT
TKQKTSTEDKDESNFEAQQQLTEEVNDIFKEAEQMEVMEENSIDKHEEELNNLPESDKNK
GKSEVPCPVSDTEEPQPVRKSKKRMRKALQQVDSDLQKQAEATPESTEQKKTDKRKGKNT
RSEKGKSTRVPKPLVLVGVQNGETSPKTRPRSAEVQVQIENYPSSEDQETSVTRNTRRSR
RLQLFAEEVQESHKKAILRASVAEKDGNVAKESEEVKGGTLEKTASPKNECMTKLAKRNG
CIYDQDLGGIENMDSGERTSYLTPKEDVKESIAEVPNAENLSEASAACYVPVVPDSTSPT
EAAVVDPTLESDNPTSSQFPKNTQMFACETKCTTTENEEDRNDSELDTEQLLRSFKATKR
KSFHLGAPNVKRSRRFDQGNTQSDEAEENNQQSNTKTSEIAKQETLADNENSSSSDLISP
SNSPGLTRKTVFEKPDQVVVEALIPDTSLSSALSPNKVSKLEMESPHLSVVPQLVDSGLR
FTAVEHEELNEASQISNSKPDYTVRDGGKGKEIRDSISSGKHSVNTAEHILVAESSLTPD
DLVTPVVQMVHRTKSNNSGSAELSTQSSIKSNPRKKRRAQRLDSSPESASSGSGEELPTL
TQIFGKPAPLAAVTQDQGDSSEANGCEAARVTADTADRLSRPPACPSPDCVNSSQASVDL
FGTPEECDVPVNDTGVSMESSQFSSEVLVTQQKIEMQKELVRLEKLMALVSEVLQEKEGS
PAKEVPSETNQSSKTTGPDTHRPPLCYQDAGQGPDQKDVPDAEREPCTKASHSKGVIQPI
VTMHGSTTETTVQCSSHMGQSVKGTEVSKTAGSSSAAKTQKNCGLPSDGQEDKENNTPSR
DRSKAKLVLVSSGLESHEQIMVKKFAKRVGARVVSQVTSEVTHIIMHTDEQLVCERTLKY
FLGIAGRKWVVSFQWISECFKQKKLLDESPFEVRGDVVNGPNHQGPSRARTTEDNNLLMK
GYKICFQGPFTDMTTDEMEWMVELCGAAVVRDPLLLDSKQKSHQLVIVQPGSESSSSAYS
RFSKQATVVTRGWLLDTVATYTLQNYNNYTT
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaactccccaaaggccacagatgtcaaaaaggggatatcagtcctttgggagactcta
cagtgtcccatatgcttggatttaatgacagtaccagtatctactaagtgtgaccatcag
ttttgcaaattttgtatgctgaaacttttggacaactctaaacaaaacagagccaactgt
ccagtgtgtaaaaccaagataaccaaaaggagcttgcaggagagccctgggtttcagaga
cttgtaacaggattgcaggacatgatacaagcatatgaacaagacaccagcacaaactac
ttcactggaatgtccctgcaagaaaaacagtcaggtgttacagatgctgaagctaccaaa
catcctcctaatacatcatcaggagatacacccttgactgaccttgacaacatggaaaat
gcagatgatgctgatcttccaaggtcccactcttcaactatagcagcccagaatggattt
gcaagactcatgggacttgaagactcagctcctttgacgacagaaaatgaaggccttgac
agtggccttggtgatgccccactgacttctgacaagaaaatgcacagctctacagataat
ttggaaccagtagaaacagaaatgtcagaaattgtggaaaagtcgacatcaacacacaaa
acaagaggcaaaaggagaactggtagattggagaacaacccccttcatccagtattaatt
tcagatgagactgaatatcaatcgttgagaaagtcctcgcggaagaagcagaaaaaggat
tcggagcgggatgagatccttgagcagaaaaagaagaaaagtctagagaaagttgctgag
tggctcatgaaagttccaactgaaggaagccttgagttggagaagccagacggagatgct
gacgactctgacagctgttcttcagcttcaacaatagatgtcaagcaacacattagtgac
gtgaatgaaaagagagaagatcgcgctaaagctcttgaagaacaggtgttcggcgccgta
tacaaacgagagagaagagggaacaggagcagctctctttttgttgaattaccaacaact
acaaaacagaaaacaagcactgaagataaagatgagagcaactttgaggcacagcagcaa
ttaacagaagaagtaaatgacatttttaaagaagcagaacagatggaagtcatggaggaa
aatagtatagacaaacatgaggaagagttgaacaacttgcctgaaagtgacaaaaataaa
ggtaaaagtgaagttccctgtcctgtgtctgatactgaagaaccacaacctgtaagaaag
tcaaagaaaaggatgcgtaaagctctgcagcaggttgacagcgatttgcagaagcaagct
gaggcaacgccagaaagtacagagcaaaagaaaactgacaagaggaaaggtaaaaacaca
aggtcagaaaaaggcaagtctaccagagtcccaaagcctcttgttctggttggggttcaa
aatggagaaaccagtccaaagactagaccaagatcagcagaagttcaagtacaaatagag
aactatcccagcagtgaggaccaagaaaccagtgtcacaagaaacaccaggagaagtaga
aggcttcaactctttgctgaggaagtccaggaaagtcacaagaaagcaatcttgagagct
agtgtagctgaaaaagatggcaatgttgcaaaggaatcagaggaagttaaaggtggaacc
ttggaaaaaactgcatcacctaagaacgaatgcatgacaaagttggccaaaagaaatgga
tgtatttatgatcaagatttaggagggattgaaaacatggattctggtgagagaacgtct
tatctgacaccaaaagaagatgttaaagagtccattgctgaagtgccgaatgctgaaaac
ctgtctgaagccagtgctgcttgttatgtccctgtggtcccagattctacaagtccaact
gaagctgctgtggtagatccaacacttgaaagtgacaatccgactagtagtcagttccca
aagaatacgcaaatgtttgcctgtgagactaagtgcactacaacagaaaatgaggaggac
aggaatgatagcgagctggacacagagcaactgctcaggagtttcaaagccactaaaagg
aagtctttccatctcggtgcgccgaatgtgaaaagaagtcgtagatttgaccaaggaaac
acgcagagcgatgaagcagaggaaaataatcaacaaagcaatacaaagacttctgaaatt
gccaaacaggagacattagcagacaatgaaaactcatcctccagtgatttgatctcccct
tctaactcccccggcctgacaagaaaaacagtttttgagaaaccagatcaagttgtggtt
gaagccttgatccctgataccagtcttagcagtgccctcagtcctaataaagtgtcaaaa
cttgaaatggaaagtcctcatctttctgttgtccctcagctagtagattctgggctccga
ttcacagctgttgaacacgaggagctaaatgaagcctctcagatttcaaacagtaagcct
gattatacagtgagggatggtggcaaagggaaggagataagagacagcatttcttctgga
aaacattccgtcaacacagctgaacatatcttagttgcagagtcttctttaactcctgat
gaccttgtgacaccagttgtccagatggtccacagaacaaaatcaaacaacagcggaagc
gcagagctcagcacgcagtcctccatcaagagcaacccaaggaagaagagaagggctcag
aggctggactcttcacccgagtctgctagcagtggatctggagaggaattaccaactttg
acgcagatttttggaaagccagctcctctggctgctgtgacccaggatcagggagattcc
agtgaagctaatggatgcgaggctgctcgtgttacagctgatacagcagatcggttgagc
cgtccacctgcatgccccagtccagactgtgttaattccagtcaagcgtctgtggacttg
tttggcacgccagaggaatgtgatgtccctgtaaatgatactggtgtttccatggaatca
tcacaattttcaagtgaagtccttgttactcagcaaaagatagaaatgcagaaggagctg
gtgaggctggagaagttgatggctctggtctcggaggtgcttcaggagaaggagggcagc
cctgcaaaagaagtcccctcagaaacaaatcaaagcagcaaaaccacaggccctgacact
cacagaccccccctgtgttaccaggatgcaggccaaggtccagaccagaaagatgtccca
gatgcagaacgagagccctgcacaaaagcatctcatagcaaaggagtcatccagcccatt
gtgacaatgcatggcagtactacagagacaacagtgcagtgctcttcacacatgggccag
agtgtaaaaggcactgaagtctccaagacagctggatcaagttcagcagccaaaacacaa
aagaactgtggtttgccatcagatgggcaggaagacaaagaaaacaacacacctagcaga
gacaggagtaaagctaagctggtgctagtgtcctctggattagagtcccatgaacagata
atggtgaaaaagtttgccaaacgagttggggcgcgtgtggtttcccaggtgacctcagag
gtgactcatataataatgcatacagatgaacaactggtgtgtgagcgcacactcaagtac
ttccttggcattgcaggcaggaagtgggtggtgagcttccagtggatctcagagtgcttc
aaacagaagaaactcttagatgagagtccttttgaagtgagaggtgacgtggtgaatgga
cccaaccaccagggcccttcaagagctcgcaccaccgaggacaataatctgctcatgaag
ggctacaagatctgcttccaggggccttttacagacatgactacagatgaaatggagtgg
atggtggagctctgtggagcagctgtagttagagatccacttctcctcgacagtaaacag
aagtcccatcagctggtcattgtacagcctggatcagagtcgtcgtcatctgcatacagc
cgtttctccaaacaagccacagttgtgacacgcggttggcttttggatacagttgcgact
tacaccctccaaaactacaacaactacacaacatga
DBGET
integrated database retrieval system
