Lates calcarifer (barramundi perch): 108899588
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Entry
108899588 CDS
T04895
Name
(RefSeq) uncharacterized protein LOC108899588 isoform X1
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108899588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108899588
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lcf04054
]
108899588
Membrane trafficking [BR:
lcf04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
108899588
Pattern recognition receptors [BR:
lcf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
108899588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PYRIN
FIIND
UPA-FIIND
CARD
DUF6088
SHOCT_2
Motif
Other DBs
NCBI-GeneID:
108899588
NCBI-ProteinID:
XP_050931904
UniProt:
A0AAJ8DV13
LinkDB
All DBs
Position
LG15:complement(6031521..6044281)
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AA seq
1119 aa
AA seq
DB search
MAEGRCTEFFVDKHQEELIQRVTNITPVIEALVSRKVINKKSYDEIMSIPDTEGRMRALY
SGPLKVGGGQGKRIFYNILETHEPYLLDYLKKTKCENTLDKVQVETMTMKTLLLETLNEL
SFGEFDEFKARVKLEKGFPLISKSRMTKANRKDAVELMVETFSHECVEVTMDVFMDMNRT
DLLQRLSDVSLGTEAKHSADEQWTTLIQREETMASVIELLLETLIDLSDRELQFLKKVLL
NHDPHQRHFSDIPWGLLMMADLQNTVALVVQIYGQQSVEEMKKVLKRMNRTDLVERLCDS
SSGAKKKNSVDKHLFPLIHKVATMIAVKELLLETLTGLSRSELKKFKWLLQLTCFQKELP
YISWRQLQRADSAGIVNLMVEMCSQQSVEVTREIFMDMNRTDLVQRLSETSSGLKEKLSV
DECCSAWIQKEETMTSVIELLLETLADLSDKEIKDFKQILLSQIPFHRSYSDSQWRLLVV
ADLQDTVLLMVQNYGQQSVEETKTVLRKMKRTDLVQRLSDSSSGATKKPSVDERCSALIQ
KVAKIAAVKQLLLETLNDLSHEELEKFKKVLQLVVVEWCLPDISWMSCHTADRVEIADLM
VETYGHQSVEVTKKVFMNINRTDLVQRLSETSSTPKEKHSGDEHRPAQSERVKQILLETL
NDLSHKELEKFRRLLQFTYFQKNLPQIPWSQLNMADGGQIVDLMVKRCGHQSVEVTMEVF
MDMNRTDLVQRLSESLRGSSGSLELAECGSSMQESSDWTKLEPEVNSTDADETPTYSLQS
EAGNFECSVSALRWVCKEKVSLKYQFWSWEGHMERMASRRYMPAGPLMDISVISGKLDEV
YLPHWICVEDNPSILDRFAVLHIDDCGDVVEKVSEVTPSHVKLSEPVFSPRAVLMKAGLP
VKINCNVLIYKTNTAFLTLHVYLIPCDPGLQQAMDKRELSFGYKIIRKPHPEKSLKMQER
FILTADLDSAEIYPEKLKLRYESRNPNFFEMFIENPHTNFKLSLTKEDEPQPVWTCVIRK
DEYQSTGQKQGKHFVDEHQCDLIDRVSNIGPILDNLLKDGVIQQEDYDQIRAIPTTQEKM
RKLYGGPLKAGGHESKDIFYRTLEEKEPCLISDLNRNES
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggtaggtgcacagagttctttgtggataaacatcaagaggagctgatccag
agagtgaccaacatcacaccagttatagaagccctcgtctcacgcaaagttatcaataaa
aaaagttatgatgaaatcatgtccatccccgacactgaggggaggatgagagcgctctat
agtggacctttgaaggtcggtggaggtcaaggaaagaggattttctacaacatccttgaa
acacatgagccatatctactggattacctgaagaaaacaaagtgtgagaacacattggat
aaagttcaggtagaaacaatgacaatgaagacgctgcttcttgaaacactgaatgaactg
agttttggggagtttgacgaattcaaggcacgtgttaaactggagaaaggtttcccactc
atctcaaagagccgaatgacaaaggcaaacaggaaggatgcagtggagttgatggttgaa
acgttcagccacgagtgtgtggaggtgaccatggatgttttcatggacatgaaccggact
gatttgttacagagattgtcagacgtcagcttaggaaccgaagcaaaacactctgcagat
gaacagtggactacactgatccagagagaagaaacgatggcgtctgttatagagctgctt
ctggaaacattgattgatttgagcgacagggagctccaattcttgaagaaggtcctcctg
aatcatgatccccatcagagacatttctcagacatcccatgggggctgctcatgatggca
gacctgcagaacacagttgctttagtggtgcagatttatggccaacagtctgtggaggag
atgaagaaagttttaaagaggatgaacaggactgatctggtggagagactgtgtgacagc
agctcaggagccaaaaaaaaaaactcggtggataaacatctgtttccactgatccacaaa
gtggcaacaatgatagctgtcaaagagctgcttttggaaacactgactggtttgagtcgc
agtgagctcaagaaattcaagtggctcctgcagctcacttgcttccagaaggagcttcca
tacatctcatggagacaactgcagagggcagacagtgcaggaatagtgaatctgatggtg
gagatgtgtagccagcagtctgtggaggtgaccagggagattttcatggacatgaacagg
actgatttggtgcagaggctgtcagagaccagctcaggactcaaagagaaactctctgta
gatgaatgctgctctgcatggatccagaaagaagaaacaatgacctctgttatagagctg
cttctggaaactctggctgatttgagtgacaaggagatcaaggatttcaagcagatcctc
ctgagtcaaattccctttcacagatcttactcagactcccaatggaggctactcgtggtg
gcagacctgcaggacacagtgttattaatggtgcagaattatggccaacagtctgtggag
gagacaaagacagttttaaggaagatgaagaggactgatctggtgcagaggctgtctgac
agcagctcaggggccacaaagaaaccctctgtagatgaacgctgctctgctctgatccag
aaagtggcaaaaattgcagctgttaaacagctgcttttggaaaccctgaatgatttgagt
catgaggagctggagaaattcaagaaagtcctgcagttggttgttgttgagtggtgcctc
ccagacatctcatggatgtcatgtcacactgctgacagggtagaaatagcagatttgatg
gtggagacctacggccatcagtctgtggaggtgaccaagaaggttttcatgaacatcaac
aggactgatctggtgcaaaggttgtcagagaccagttcaacacccaaagagaaacactct
ggtgatgaacatcgacctgcacagtctgagagagttaaacagattcttttggaaacgtta
aatgacctgagtcacaaggagcttgaaaaattcaggcggttgttgcagtttacatacttc
cagaagaaccttccacaaatcccatggagccaactgaacatggcagacggggggcaaata
gtggacctgatggtgaagagatgtggccatcagtctgtggaagtgaccatggaggttttc
atggacatgaacaggactgatctggtgcagaggctgtcagagagcctcagaggatcttca
ggaagcctggagcttgcagaatgtggaagctccatgcaggaatccagcgactggactaaa
cttgaacctgaagtgaacagcacagatgcagatgagactccaacatacagtctacagtct
gaggcaggaaactttgaatgcagtgtctctgccttacgctgggtctgtaaggaaaaggtc
agcctcaagtaccagttttggtcttgggagggacacatggagaggatggcgagcagacga
tacatgcctgcaggtcccctgatggacatctcagtaatttctgggaagttagatgaagtt
tacctgccgcactggatctgtgttgaagacaacccatcaatattagacaggtttgcagtc
ctgcacatagatgactgtggagatgttgtggaaaaagtgtctgaggtcacaccatcccat
gtcaagttatctgaaccagttttctccccaagagcggtcctgatgaaagctggacttcct
gtgaaaattaactgtaacgtgttaatatataagaccaacacagctttcctcacactccat
gtttatctgattccatgtgatcctggtctacagcaggcaatggacaagagggaattatcc
tttggatacaaaatcatccgtaagccacatccagagaagtctctgaaaatgcaagagcgt
ttcatcctaacagctgatttggacagtgcagaaatttaccctgagaaattaaagctcaga
tatgaaagcagaaaccccaacttctttgaaatgtttattgaaaatccacacacaaacttc
aagctcagtctcaccaaagaagatgagcctcagcctgtatggacctgtgtaattcgaaaa
gatgaataccaaagcacaggccaaaaacaagggaagcactttgtggatgaacaccagtgt
gacctgatcgacagagtgagcaatataggaccaatcttggataatcttctgaaagatggt
gtaatccaacaagaagattatgatcaaatcagggcaattccaaccactcaagagaagatg
aggaagctctatggtggtcccctgaaagctggtggacatgaaagcaaagacatcttctac
agaacccttgaagagaaggagccatgtcttatttccgatctcaataggaatgagtcataa
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