Lates calcarifer (barramundi perch): 108900007
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Entry
108900007 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: dermatan-sulfate epimerase-like protein
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
lcf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
108900007
Enzymes [BR:
lcf01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
108900007
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GFIT
Motif
Pfam:
Sulfotransfer_3
Sulfotransfer_1
DUF4962
Motif
Other DBs
NCBI-GeneID:
108900007
NCBI-ProteinID:
XP_018556305
UniProt:
A0AAJ7QHL6
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Position
LG24:complement(16223988..16230763)
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AA seq
1218 aa
AA seq
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MCSQMPGNMAVNWVVYSVFLLPLFAVGTAFSGVFNATDRDIFTDDLLQVKLPQNRATEQW
KLQSADSHPNLYFNQVDVLHLRQRSSTTHSHIFKVIRAAVLTMLSNVPFYMPPVKHEEFT
SKWNEIYGNNLPPLALYCLLCPEDSAALQFLIKFMDRMAEYPDWKVTSAPNDEVPMAHSL
TGFATAYDFIYSQLDKHRRDVYLKKIRSETEELYELSKYRGWGKQYLQNHQTTNILAILT
GAIVVESHDDPESMIWKQVAVNYMEKTMFLLNHVVDGSLDEGVAYGSYTAKSITQYVFLA
QRHFNIDNTQNNWLRGHFWFYYATLLPGFQRTVGIADSNYNWFYGPESQLVFLDTFVMRN
GTGNWLAQQIRKHRPKDGPMGQSSAQRWATLHTEYIWYNSHLTPQPPHNFGKARMHIFSN
WGVVTYGAGLPNGQGNTFVSFKSSSLGGRAVYDIVHDKPYSWVDGWNSFNPGHEHPDQNS
FTFAPNGQVFVSEALYGPKYSYLNNVLVFSPSPTSQCNNPWEGQLGECAKWLRWTDEGVG
DARGEVIVASSHRDTMFVSGEAVSAYSPAMRLKSVFRALVLLNSQTLLVLDHIEKWGDSP
VRSLSAFFHNLDIDFKYVPFRFMDKYNGAMMDVWDAHYKMFWFDTQGHSPDTRIQEAEQA
AEFKKRWTQYVNVTFPMTGTVSRVAYVLHGPYVKVSNCRFMDNSKNGVRLSLTINNTERI
VSIATNYKDIGARLNYLGFGGHCKVEDRYQITRYGLGTQLIPKQISSDNQLFDFGFTVNV
IAGVVLCVAIGFLTMQRKFYVCFSRLMRYALLSVLILWIAELLFVSNSCDQLLCGVKWKG
ASAKSEVNKQIRLYEQHRLPLPTVVITTLPGSGSEILKHLFYNSSDFVYIRVPTEHVDIP
ETEFEFDSLVDACEWSRSDAVHGRFKIIQGWLHSLVHNTKLHLQNIQLVEGSRVKQPQRV
GPSRDRKKRSRRREPASELKGKLRASLDRDAEYIREMRRHVAEYPDARVVLNMRSGSWAL
KMPFIHEVVGPSLRTIYLVRDPRAWIYLMVYNSKPSLYSLKNIPQHLSLIFKDDAVRDGC
PSVAPEFKIIQRLLSHSEMNPVLILAHLWLAHTAAVLRVSESLPEESYLQVRFEDVVNFP
QETAENIHTFLGVPVSPSALNQLIFTTSTNLYNLMYEGDISPANINMWRQKMPRKDIRLI
EDVCGIVMKRLGYTRFAS
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcacaaatgcccggcaacatggcagttaactgggttgtatattctgttttttta
ctaccactgtttgcagtggggactgctttctctggggtcttcaatgccacagacagagac
atttttacagatgacttgctgcaggtcaagctcccacaaaacagagcaaccgagcagtgg
aaactccagtctgctgattcccatccaaacctgtattttaaccaagtggatgtgttgcac
ttgaggcaaaggtcctccaccacccacagtcacatatttaaagtcatccgggcagctgtg
ctcaccatgttgtctaatgtccccttttatatgccccctgtgaaacatgaggagtttaca
agcaaatggaatgagatttatgggaacaacctgcctcccctggctctctactgcctgttg
tgcccagaggactctgctgccctgcagtttcttatcaagtttatggataggatggctgaa
taccccgactggaaggtgaccagcgcccccaacgatgaggtccccatggcacactctctc
actgggttcgcaactgcgtatgactttatttactctcagctggataagcacagaagagat
gtttacctcaagaaaattcgctcagagacagaagagctgtatgagctctctaagtacaga
gggtgggggaaacagtatctccagaatcatcagactactaacatattagccatcctgact
ggtgcaatagtggttgaatcacatgatgacccggaatcaatgatctggaaacaagtggct
gtgaactacatggagaaaactatgtttctcctaaatcatgttgttgatgggtctctggat
gagggagtagcctatgggagctacacagccaagtccatcacacagtatgtcttcttagcc
cagcgtcatttcaacattgataacacgcagaacaactggctgcggggacacttctggttt
tattatgccactctgttgccaggctttcagaggacagttggcatcgcagactccaactac
aactggttttatgggccagagagtcagcttgttttccttgatacgttcgtcatgaggaac
ggaacgggtaactggctcgctcaacagattagaaagcaccggcccaaggatggccccatg
gggcagtcatctgcgcagcgctgggctacacttcacacagaatacatctggtacaactcc
cacctcacaccgcagcctccccacaattttggcaaagcgaggatgcatattttctcaaac
tggggtgtggttacctatggagcagggcttcccaacggtcagggtaatacttttgtctcc
tttaagtctagcagcctgggtggccgtgcagtctatgacattgtccatgacaagccttac
tcctgggtggatggctggaacagctttaaccctggtcatgagcacccagaccagaattct
ttcacatttgctcctaatgggcaagtatttgtatctgaagcactttatggcccaaagtac
agctatcttaacaatgttttggtgttcagcccctctcctaccagtcagtgtaacaatcca
tgggagggtcagttgggggagtgtgctaagtggctgcgctggactgatgaaggggtaggt
gatgccagaggggaggtgatcgtcgcctcctcacacagggacactatgtttgtgagcggg
gaagctgtgtcagcctactcccctgccatgagactaaagagcgtgttcagagccttggtt
ctgctcaactctcagacgttgctggtacttgaccacatagagaagtggggtgactcacct
gtgaggtcactcagtgctttttttcacaatctcgacattgactttaaatacgttcctttc
agattcatggacaaatataatggcgccatgatggacgtgtgggatgctcattataaaatg
ttctggttcgacacccagggtcacagccctgatactaggatacaggaggcagagcaagcg
gctgagtttaaaaagaggtggacgcagtatgtcaacgtcaccttcccaatgacaggcaca
gtcagcagagtagcttatgttttacacgggccatatgtcaaagtgtccaactgtagattt
atggataacagtaaaaatggagtgaggctttctttaaccataaataacacagagaggata
gtctcaatagctacaaactataaagacataggggcgaggctgaattatttaggatttgga
ggtcactgtaaagttgaggatagatatcaaatcactcgatacggccttgggactcaactc
atccccaaacaaatcagcagtgacaatcagctgtttgactttggattcacagtcaatgtg
attgcaggggttgttctctgtgtggccataggatttctgaccatgcagaggaagttttat
gtctgcttcagcaggctgatgcgatatgccctcctctctgtgctcattctgtggatagcc
gagctgctgtttgtgtctaacagctgtgatcagcttctctgtggggtaaaatggaaaggt
gcgagtgccaaaagtgaagtaaacaaacaaatcagactgtatgagcagcaccggctcccc
ctccccaccgtcgtcataacaacccttcctggatcgggatcggaaatactcaagcatctt
ttctacaacagctcggactttgtttacataagagttcccactgagcatgtggacattcct
gagactgagtttgagtttgactctctggtcgacgcctgcgagtggtcaaggtcagacgct
gtgcacggacggtttaagattattcagggctggctgcattcgctggtccacaacaccaag
ctgcacttgcagaatattcagctggtggagggcagcagggtcaaacagccccagagggtt
ggcccctccagggacagaaagaaaagatccaggaggagggagccagcgtctgagctgaag
ggcaaactgagggccagtctggacagagatgcagagtacattagggagatgagacgccat
gtagcagagtaccctgatgcacgggtggtcctcaacatgcggagtggaagctgggcgctc
aaaatgcctttcattcacgaggtggtgggaccctccttgaggacaatctacttggtgaga
gaccctagagcgtggatttatctcatggtttataacagcaaacccagtctttactcccta
aaaaacatcccgcagcacctttccttgatattcaaggatgatgctgtcagggatggatgc
ccaagtgtggccccggagtttaaaataatccagaggctgctgtcccattctgagatgaac
ccagtcctgatactggctcacctgtggctggctcacactgcagcggtgctgagggtcagc
gagagcctccccgaggagtcctacctccaagtgaggtttgaggatgtggtcaacttcccg
caggagacggcggaaaacatacacacatttctcggggttcccgtctcaccctcagccctc
aaccaactcattttcaccacctccacgaacctgtacaatctaatgtatgaaggggacatt
tcaccagctaatattaacatgtggagacaaaaaatgcctcgaaaagacatcagactaata
gaggatgtatgtgggattgtgatgaagaggctgggttacaccagatttgccagttaa
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