Lates calcarifer (barramundi perch): 108900637
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Entry
108900637 CDS
T04895
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108900637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108900637
Enzymes [BR:
lcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108900637
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108900637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
108900637
NCBI-ProteinID:
XP_018557305
UniProt:
A0A4W6E3V4
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Position
LG7_2:complement(10643503..10648513)
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AA seq
911 aa
AA seq
DB search
MEGTSKSDAAAQPSVAAQVPFLHLCTTLEKIQKAKFRPDKSKILGDFIESWRKFHSALHK
DSPKTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAVNNDNKQKDLVRKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNLSVSL
SEVSIGIFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAYNPTTENFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNDQKLGKETLKKRFETLQTVFTPLKGRIHLVPKTDARTMQEVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMEELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIVQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRNKASGKLASRHLYITDDDGPQKKKRKLVPKTKKVVALIDHCKPQDLSGVTKE
TDMFEDVEFCILNGTQDHSKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLMLS
NQHDVVWASWLLECLDQKEVVPWQPHHMIHMSPSTKEHFAKEYDSYGDSYFVDTDEQQLR
EVFGRIGSRDSSVAVNVEQVEQRYSWADLPTSMFRPFTAYMDSYANIRDPKIVIPATCLD
IRALEFRYHGGTVVQKLEEGVSHVIISEETRLLDLRTLRRRFSRKFKIVRDSWVTDSIKA
GYLMNDDSYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccaaaagtgatgctgctgctcagccatctgttgcagctcaggttcct
ttccttcacctgtgtaccactttagagaaaatccaaaaggctaaattccgtccagataaa
tccaagatccttggggatttcattgagtcatggaggaagtttcattctgctctccacaaa
gacagtcccaaaacaacagactctttctacccggctatgcgcctcatagttccccctttc
gaacgagagcggatggcatatggcatcaaagagaatatgttagctaaactctacatcgat
gtattaggcctcccaaagaatggcccagaggccaataaactgttgaactaccgagctcca
actacatcccaaggagaagctggagactttgctggcatggcgtattttgtgctgaaaaaa
cgctgcaccagccaaggaaacctcagtatcaaagaagtcaatgactttctggactctgtg
gctgtcaacaatgacaacaagcagaaggatcttgtgagaaaaagtctgctgcacctcatc
acccagagctcagctcttgagcaaaaatggctcatcagaatgattctgaaggatatgaag
ctcgggatcagcaaggaaactgttctccaggtcttccacccagatgctgcagagctctac
aatgtcaacacagacttgaacaaggtgtgccagcagctccacaacctgtctgtgtcttta
agtgaagtctccattggaatattttctgccttcaagcccatgttagcagctgtggctaac
atccgcaatgtggaaaaacagatgggcaacagccctttttacatccagaccaagctggat
ggggagcgtattcagctgcacaaagatggagatgtctacaaatactttagccgaaatgct
tttgaatacacgcagcagtttggaggatccccactggagggctcactgactccttacatc
cacaatgtttttaaaagcaatgttgtgaactgtatcctcgatggtgagatgatggcgtac
aacccgaccacagagaacttcatgcagaaagggagcaagtttgacatcaagaggctgatg
gaagactctgagttacaaacgtgcttctgtgtgtttgatgttttgttagtcaatgaccag
aagcttggaaaggaaacgctcaagaagcgttttgagacccttcagacagttttcacccca
ctcaagggaaggatacacttggtgccgaagactgatgccagaaccatgcaggaggtggtg
aacgcactcaatgacgccatagacaacagagaagaggggataatggtgaaggatcctttg
tccatctacaaacctgacaagcggggggagggctggctgaaaataaagccagaatacgtt
gatggcttgatggatgagcttgacctgttgattgttggcggctactgggggaaagggaga
cggggtggtatgatgtcccatttcttatgtgctgttgctgaagcaccaaagcctggagag
aaaccttcagttttccacacactctgccgcatcggctctggctataccatggaggagttg
tatgaccttggtttgaagctcgccaagcattggaaagtctaccgaaagaacgacccacca
gcatctatcctttgtggaacagagaagccagaggtctacatcgaaccttgcaactctgtc
atcgtccaggtcagggcagctgagatagtcggcagcgacatgtacaaaaccaactgtacc
cttcgcttccccaggattgagaagatccgcgaagacaaggagtggcaccagtgcatgact
ctggcagagctggatcagttccgcaacaaggcgtcgggcaaactcgcctcacggcacctt
tacatcactgatgacgatggaccgcagaagaagaagcgcaagctggtacccaaaaccaag
aaggtggtcgcgctcatcgaccactgtaagcctcaggacctttccggggttaccaaggag
acagatatgtttgaagatgtggagttctgcatcctgaatggcactcaggatcactccaaa
gccgagctggaaaagggggtggccaggtgtggaggaatcgtggttcaaaacccaggacgg
gacacctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctgatgttgtcc
aaccagcacgatgtggtttgggcctcctggctgctggagtgcctggaccagaaggaagtg
gtcccatggcaaccacaccacatgatccacatgtcgccctccaccaaggaacactttgcc
aaggagtacgacagctacggcgacagctacttcgtggacacagacgagcagcagttgcgg
gaggtgtttggccggatcggcagcagggactcatcggttgccgtgaacgttgaacaggtg
gagcagcgttacagctgggctgaccttcccaccagcatgttcagacccttcacagcttac
atggacagctatgctaatataagagaccctaaaattgtcatacctgccacctgtttggac
atcagggcgctggagtttcgctaccatggaggcacagttgtgcagaagttggaggaagga
gtctctcacgtcattatctcagaggaaacaagacttctggatttacggactctgaggcgc
cgcttttcaaggaagtttaagattgtaagagactcatgggtgactgattcaatcaaagca
gggtatctcatgaatgatgatagttacctggtttga
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