Lates calcarifer (barramundi perch): 108900781
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Entry
108900781 CDS
T04895
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase lunatic fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00514
Other types of O-glycan biosynthesis
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
108900781
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108900781
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108900781
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
108900781
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
O-Glycan
108900781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Galactosyl_T
Glyco_tranf_2_4
Motif
Other DBs
NCBI-GeneID:
108900781
NCBI-ProteinID:
XP_018557525
UniProt:
A0A4W6CPE7
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Position
LG11:6218326..6226046
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AA seq
369 aa
AA seq
DB search
MLKNNGKKTAISVASTACLCLLLLLVAVQHHRVQVDDSETGGEERSLLQDAAREDAGGAQ
VKKGFSAYFTKLTRGRREAEKPARSSSASAAEPPPAEDISADDIFIAVKTTKKFHQSRLN
LLLDTWISRNVQQTYIFTDGEDEELKKKIGNHAINTNCSAAHSRQALSCKMAVEYDKFIE
SGKKWFCHVDDDNYVNVRTLVKHLSQYPHTQDMYIGKPSLDRPIEATERLGDNKMKPVNF
WFATGGAGFCVSRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVPLTRSNL
FHSHLENLQQVSRSEIHKQITLSYGMFENKSNIINLKGAFPVEEDPSRFKSVHCLLYPDT
PWCPPQVAF
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagaataatggaaagaagacagctatctccgtagccagcacagcgtgtctctgc
ctgctgctgctcctggtcgccgtgcagcatcaccgggtccaggtggatgattcggagacg
ggcggagaggagcggtctctcctccaagacgccgcgcgggaagatgccgggggcgcgcag
gtcaaaaaagggttctcggcgtacttcaccaaactgacgcgcgggcggagggaggcggag
aagcccgcacggtcctcctccgcgtccgccgctgagccgcctcctgctgaggacatcagc
gccgatgacatcttcatcgctgtgaagaccaccaagaagttccaccagtccagactcaac
ctgcttctggacacgtggatctcaagaaacgtgcaacagacttacatcttcacagatgga
gaagatgaggagctaaaaaagaaaattgggaatcacgcaatcaacaccaactgctctgca
gctcacagccgacaagctctgtcttgcaagatggcggtggaatatgacaagtttatagag
tctgggaaaaagtggttctgtcacgttgatgatgacaactacgtgaatgttcggactctg
gtgaagcacctgtcccagtacccccacacccaggacatgtacattggtaaacccagccta
gatcggcccatagaggctacagagaggctgggggacaataaaatgaaaccagtcaatttc
tggtttgctactggaggggcaggcttctgtgtgagccggggtctggcactgaagatgagc
ccgtgggcaagtggcggtcacttcatgaacacagcagagaaaatccgtctgcctgacgac
tgcaccatcggctacatcatcgagtcggttcttggggttccactgacccgcagcaacctg
ttccactcccacctggagaacctgcaacaggtgtcgagatctgagattcacaagcagatc
accctcagttatgggatgtttgaaaacaagagcaatatcatcaatttgaaaggggctttt
cctgtggaggaggatccatccaggttcaagtctgtgcactgtctcctgtacccagacacc
ccgtggtgtccccctcaggttgccttttag
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