Lates calcarifer (barramundi perch): 108902023
Help
Entry
108902023 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: otoferlin-like
KO
K19949
otoferlin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108902023
Membrane trafficking [BR:
lcf04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108902023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
FerA
Motif
Other DBs
NCBI-GeneID:
108902023
NCBI-ProteinID:
XP_050934308
UniProt:
A0AAJ8BJP5
LinkDB
All DBs
Position
LG19:complement(18689378..18704452)
Genome browser
AA seq
1794 aa
AA seq
DB search
MTGGLDEPAILETENLDRDGMFMGGPDPDTVSLASVTAVTTNVSNKRSKPDIKMEPSSGR
PVDYQVSVTVIEARQLVGLNMDPMVCVEIGEDKKYTSMKESTNCPYYNEYFVFDFHVPPD
VMFDKILKLSVIHSKNLLRSGTLVGTFKLDVGTIYSQPEHQFYHKWALLSDPDDITAGCK
GYVKCDIAVVAKGDTIKTPHKANESDEDDIEGNLLIPEGVPAERQWARYYLKIYRAEGLP
RMNTSIMANVKKAFIGENKDLVDPYVQVQFAGQKGKTSVQKSCYEPIWNEQIVFTEMFPP
LCKRMKLQIRDSDKVNDVAIGTHFLDLRKISNDGDKGFLPTLGPAWVNMYGSTRTYTLMD
EYQELNEGLGEGVSFRARLLISLGVEILDPSSPDITSSTEVQVEGVPNISETATGKVEEF
FLFGSFLEATMIDRKIGDKPISFEVTIGYYGNEIDGVVKPQTKGKKGGGNGDEEETELIH
NSSEEEMDDDGDLTSVATTPPMKPVITDRNYFHLPYFERKPCIYIKSWWQDQRRRLYNAN
IIDNVADKLEDGLNDVQEIIKTEKAYPERRLRGVLEELSQGCSQFISLANKDQNQSGRTK
LDRERLKLCLSEVEAIGQQAKAMRSQVKKSTVRDKLKLAQNFLTKLRFLADEPQHSVPDV
FIWMISNGKRIAYARVPSKDILYSSIDEERGKECGKVKTIFLRIPGKKGFGPAGWTVQSK
IEIYLWLGLNRQRKDYLNGLPNGFEENKLSKGPGMPTSPPISLTYMMKQIFQLRVHMYQA
RSLFAADSTGLSDPFARVFFSTQSQVTEVLAETLCPTWDQLLVFENVELFGEATELRDDP
PIIVIEIYDQDTVGKADFMGRTFAKPVVKMADEHYGPPRFPPQLEYYQIYRGNCTAGEML
AAFELLQIGPNGKADLPPIDGPTDMERGPILPVPLGIRPVLSKYRIEVLFWGLRDLKRVN
LAQVDRPRVDIECAGKGVQSALIPNYKKNPNFSTLVKWFEVSLXFWILCVRICPENELLH
PPLNIRVVDCRAFGRYTLVGSNAVTSLRKFIYRATDKQANNYSTMEEIIVVNMEPEPAFK
KMETVVKLDSCSDAVVKVEDDGKDGNGKKKKRKKGDEPEEEELDESMLDWWSKYFASIET
LTEALKAQEAALSDSEDKDDMDIADGGDIKPDDSPVKGTKRGKGKKEKRKPAIDPLEKKK
PKLDELKVYPKELESEFDNFEDWLHSFNLFRGKGGDDDDQNVTDEDRIVGKFKGSLCMYK
VSDDMPRDMSFDSNMGMFQNIPHNDPINVLVRIYVIRATDLHPADINGKADPYIAIKLGK
TEIKDKENYISKQLNPLFGKSFDVEATFPMDSTLTVSIYDWDLVGTDDLIGETKLDLENR
FYSKHRATCGIACNYAIHGYNVWRDPMKPTQILAKLCKDGKLDGPHYGPGGRVKVENRVF
MGPTEIEDENGLKKQTDEHLALTVLKHWEDIPRVGCKLIPEHVETRPLLHPDKPGIEQGR
IEMWVDMFPKDMTAPGPALDISPRKPKKFELRVIIWNTDEVVLEDDDIFTGEKSSDIFVR
GWLKGQQEDKQDTDVHYHSITGEGNFNWRFVYPFDYLMAEEKIVISKKESMFAWDETEYK
IPARLNLQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTIEMVTNEAEMPMVSIFKQ
KRVKGWWPFVARNEEDEFELTGKVEAELHLLTGEEAEKSPAGEGRNEPDPLEKPNRPDTS
LLWFLTPFKAIKHLVCTQYKWLAIKIVTALLLLAMLALFLYSMPGYMVKKMLGA
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atgacaggaggactagatgagccagctatcctggagacagaaaatcttgatcgtgatggc
atgttcatgggaggaccagaccccgacaccgtttcactggcctccgtcacagccgtcacc
accaatgtatccaataagagatcaaagccagacataaagatggagcccagctctggaaga
ccagtagattaccaagtcagcgtgaccgtgattgaggccagacagctggtgggactgaac
atggatccaatggtctgtgtggagatcggagaggataaaaagtacacctcaatgaaggaa
tcaaccaactgcccgtactacaatgaatattttgtgttcgacttccacgtccctccagat
gttatgtttgacaaaatcctgaagttgtctgtaatccactctaaaaatcttctacgtagt
ggaacactggttggaactttcaaactggatgttggcacaatctactcccagccagaacat
cagttttaccacaaatgggctctgttgtctgaccctgacgacatcacagctggttgtaaa
ggctacgtgaagtgtgatattgcagttgtggctaaaggagacactataaagactccacac
aaggccaatgagtctgatgaagatgacatagagggcaacctcttaatacctgagggggta
cctgcagagcggcagtgggctcgctattacctgaagatctacagagcagagggactccca
agaatgaacaccagcatcatggccaacgtcaaaaaggcctttataggagaaaataaggac
ctggttgatccttatgtccaagtacagtttgctgggcagaaggggaaaacgtcagttcaa
aagagctgctacgagcccatctggaatgagcaaattgttttcactgagatgtttccacca
ctgtgcaaacgcatgaagctgcagatccgcgactctgataaagtgaatgacgttgctata
ggaacacacttcctggacctacggaagatttccaatgatggggacaaaggcttccttccc
acactgggacccgcctgggtcaacatgtacggctccactcgtacctacaccctgatggac
gagtatcaggagttaaatgaaggactcggagagggggtgtccttcagagcccgtctgctc
atcagcctgggtgtggagatcctggacccctcctcccctgacattaccagctccacagag
gtgcaggtggagggagtacccaacatctcagagactgcaactgggaaggttgaggaattt
ttcctgtttggatcgttccttgaggccacaatgattgacagaaagattggtgataagccc
atcagctttgaggtcaccataggttactatggaaacgagattgatggagtcgtcaagcca
caaacgaaagggaagaagggtggaggcaacggtgacgaagaagaaactgagctgattcac
aactccagtgaggaggagatggacgatgatggagacctgacttcagtggcaactacgcct
cccatgaaacctgtcatcactgatcgaaactacttccacctgccgtattttgagaggaag
ccatgtatctacatcaagagctggtggcaggatcagagaaggaggctgtacaatgccaac
attatagacaatgttgcagataaactggaggatggactaaatgatgtgcaggagatcatt
aagacagagaaggcctatcctgagcgcagacttcgtggtgtccttgaggagctcagccaa
ggatgcagtcagttcatttccctggcaaacaaggaccagaatcagtctggaagaaccaaa
cttgacagggagcgactgaagctgtgcttgtcagaagtggaggccattggccagcaggcg
aaggccatgaggtcccaggtgaagaaaagcacagtgagagataaactcaagctggctcag
aacttcctcacaaagctgcgctttctggctgatgaacctcagcacagtgttcctgatgtt
ttcatatggatgataagtaatgggaaacgaatcgcttatgcacgtgtcccctccaaagac
atcctttattccagtatagatgaggagaggggaaaggagtgtggcaaagtcaagacgatc
tttctccggatccctggaaagaaaggatttgggcctgctggttggactgtgcagtccaag
atagagatttatctgtggctgggtctgaaccggcagcgcaaagactacctgaacggcctc
cccaacggatttgaggaaaataagttgtccaaaggacctggcatgccgacctcacctccc
atcagcctcacctacatgatgaaacaaatcttccagctgagggtccacatgtaccaagct
cgcagcctgtttgctgctgacagcacaggcctgtctgatccctttgcaagagtcttcttc
tcaacacaaagtcaagtcactgaggtgttggccgagaccctctgccccacatgggaccag
ctgctggtctttgagaacgtggagttgtttggagaggccactgaactgagagacgaccct
cctattatcgtcattgaaatctatgatcaagacacagtgggcaaagctgatttcatgggc
agaacctttgctaagcctgtggtcaagatggcagatgagcactatggcccgccacgcttc
cctccacagctggagtactatcagatctaccgtgggaactgtaccgctggagaaatgctg
gcagcttttgaactgctgcagattggccccaatgggaaagctgacctgcctcccatagat
ggtcctacagatatggagcgtggtccaatcctgcctgtaccactggggatcagaccagta
ctcagcaagtacaggattgaggttttgttctggggcttgagagacctgaagagggtgaat
ctggcccaggtggatcggcctcgtgtggacattgagtgtgcagggaagggagtacaatct
gccctcatccccaactacaagaagaaccccaacttcagcacccttgtcaagtggtttgaa
gtgtccctataattctggattttgtgtgtcaggatctgccctgagaatgagctacttcac
ccgccgctgaacatccgagtggtggactgcagggcttttggtcgctatactctggttggc
tccaatgctgtcaccagcctgcggaagttcatctacagggcgacagacaagcaggctaat
aactactccacaatggaggaaattattgttgtcaacatggaacctgagcctgcttttaag
aaaatggaaactgtggtcaaactggactcttgctccgatgctgtggtcaaagttgaggat
gatggtaaggatggaaacgggaaaaagaagaagaggaagaagggtgatgagccagaggaa
gaggaacttgatgaaagcatgttggactggtggtccaaatattttgcctccattgaaact
ttgacagaggcactcaaggctcaggaagcagctctctcagactcagaggacaaagatgac
atggacattgcagatggtggagatatcaaacctgatgactctcctgtgaaaggcaccaag
agaggaaaaggaaagaaggaaaagaggaagccggcaatcgacccgttagagaagaaaaag
ccgaagttggatgagctgaaggtgtatccgaaggaactggagagcgaatttgacaacttt
gaggactggcttcacagttttaatctgttcaggggaaagggtggtgatgacgacgaccaa
aacgtgacagatgaggacaggattgttgggaaattcaaaggctcattgtgcatgtacaaa
gtgtcagatgatatgcccagagacatgagcttcgactccaacatgggaatgtttcagaac
attcctcacaatgatcccattaatgtccttgtccgcatctatgtcatcagggcaactgat
ctgcatcctgctgacattaatggaaaagctgatccatacattgcaatcaaactgggaaag
accgagatcaaagacaaagagaactacatctcaaaacagctgaaccctttgtttggcaaa
tcctttgatgtggaggccacattcccaatggattccacactgactgtgtcaatttacgac
tgggacctggtgggaactgacgacctgattggagaaaccaaacttgacctcgagaaccgt
ttctacagcaaacacagagccacatgtggtatcgcatgtaactacgccatccatggttac
aatgtttggagggacccaatgaaacctacacagatcctggctaaactgtgcaaggatggc
aaactggatgggccgcactatggccctggaggaagagtgaaggtggaaaaccgtgtcttt
atgggaccgactgagatcgaggatgaaaatggtttgaagaagcaaacagatgaacacctg
gctctgaccgtgttaaagcactgggaggatatcccacgggtcggatgcaaactcatccca
gaacacgtggaaacaagaccactgctccaccctgacaaaccaggaattgaacaaggaaga
attgagatgtgggtggatatgttccctaaggacatgactgccccaggccctgcacttgac
atttcaccaaggaaaccaaagaagtttgaactgagggtgatcatctggaacacagatgaa
gttgttctagaggatgacgacatcttcactggcgagaaatctagtgatatatttgtgcga
ggttggttgaaagggcagcaggaggacaaacaggacactgacgtccactaccactccatc
actggggagggcaactttaactggcgctttgtctaccccttcgactacctcatggctgaa
gagaagatcgtcatctcaaaaaaagagtccatgtttgcctgggatgagacagagtacaag
attccagctcgtcttaacctgcaagtgtgggacgctgaccatttctctgcagatgatttc
ttaggcgcaattgaactggacctgaaccgtttcccacgtggtgcaaagactgccaagcag
tgcaccattgagatggtgaccaatgaagcagagatgcccatggtctccatcttcaaacag
aagagggtcaaaggctggtggccatttgtggccaggaatgaagaggatgagtttgaactg
acgggaaaagtggaagcagagctgcaccttctgacaggagaggaagctgagaaaagccca
gctggtgaaggacgcaacgaaccagacccactagagaaacccaaccggccagacaccagc
cttctgtggttcctcactcccttcaaagccataaaacatttggtctgcacgcagtacaag
tggctggccatcaagattgtcactgctctcctgctgctggccatgctggctcttttcctc
tacagcatgcctggttacatggtcaagaaaatgctgggagcttga
DBGET
integrated database retrieval system
