Longicatena caecimuris: L3BBH23_06830
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Entry
L3BBH23_06830 CDS
T07231
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcg
Longicatena caecimuris
Pathway
lcg03030
DNA replication
lcg03410
Base excision repair
lcg03420
Nucleotide excision repair
lcg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3BBH23_06830 (ligA)
03410 Base excision repair
L3BBH23_06830 (ligA)
03420 Nucleotide excision repair
L3BBH23_06830 (ligA)
03430 Mismatch repair
L3BBH23_06830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcg03032
]
L3BBH23_06830 (ligA)
03400 DNA repair and recombination proteins [BR:
lcg03400
]
L3BBH23_06830 (ligA)
Enzymes [BR:
lcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L3BBH23_06830 (ligA)
DNA replication proteins [BR:
lcg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L3BBH23_06830 (ligA)
DNA repair and recombination proteins [BR:
lcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L3BBH23_06830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L3BBH23_06830 (ligA)
MMR (mismatch excision repair)
DNA ligase
L3BBH23_06830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L3BBH23_06830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
RNA_ligase
PTCB-BRCT
HHH_8
PFL-like
BRCT_2
DZR_2
DUF4004
Glyco_hydro_79n
Motif
Other DBs
NCBI-ProteinID:
BCT44238
LinkDB
All DBs
Position
724051..726039
Genome browser
AA seq
662 aa
AA seq
DB search
MDVQQRILALRKQLDTYAYEYYVLDQPSVPDAEYDQAYQELLKLEDTYPQYRDPNSITQR
VGGVVLDAFTKVTHKQQMLSLSNAFNLEDLQAFDERVRSIVPKVSYVVELKMDGLAISLH
YHDGRFVQAVTRGDGFVGEDVTNNVRTIASIPMHIERMGDVEVRGEVFMPKKSFAELNAQ
REKNGEDVFANPRNAAAGSIRQLDSKIAASRKLDAFLYYYEDALGAGIQTHEEALETMEQ
LHIKVNPLRRVCNSMDEVWSFIQEMSEQRNDLPYEIDGMVIKVNELTAWEQLGTTVKAPR
YAIAYKFPAEEVVTKLLDIVLTVGRTGRITPNAVLEPVRVAGTSVSAAQLHNEDMIKEKD
IRIQDDVVVRKAGDIIPEVVRPLIERRNGTQARYVFPKECPVCGSALVRLSDEAAHYCIN
QDCPARVVESIIHFASRDAMDIDTLGDKKVEFFHKEGLLNTIEDIYHLKDHKETILQMEG
FKERSYQKLIDAIEASKQNPLEDLVYGLGIRQVGKKAAKVLAKHFLTMEKLMAASEEELV
AIKDIGDITAQSIVAFFREPKNVELIDHLRGFGLRMDSEEEIIQESMFTGKTVVLTGSLQ
QMTRNEAKELLESLGANVSGSVSKKTDLVIYGEAAGSKLTKAQSLGVATMDEATFLQEVK
TS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgcaacagcgtatattagcattacgaaaacaattagatacttatgcgtatgaa
tattatgtattggatcagcccagtgtgccagatgcggaatacgatcaggcatatcaggag
ctgttaaagctagaggatacttacccgcaatatcgagatcccaattcaattacccaaaga
gttggcggtgtggttttagatgcgtttaccaaggtaacacacaaacagcagatgttgtcc
ttaagcaatgcttttaatttggaagacttgcaggcttttgacgaacgtgtgcgcagtatc
gtgccaaaggtgagctatgtggtagaattgaaaatggatggacttgccatttctttacat
tatcacgatggccgctttgtacaggcggtgacccgcggcgatggctttgtgggtgaagat
gtaaccaataatgttcgtacgattgcttccattccgatgcacattgaacgcatgggcgat
gtggaggtacgtggagaagtcttcatgccaaagaaaagctttgcggaactcaatgcgcaa
cgtgaaaagaatggcgaagatgtttttgcgaatccccgcaatgcggcagctggcagtatt
cgtcaattagatagtaaaattgcggctagtcgaaaactggatgcgttcttatattattat
gaggatgctttaggcgctgggatacagacacatgaagaagcgttagaaacaatggaacag
ctgcatatcaaggtgaatccattacgtcgagtatgtaacagcatggatgaggtatggagc
tttattcaggaaatgagtgagcagcgtaatgatcttccatatgaaattgatggtatggtc
atcaaagtgaatgaattgacagcctgggaacaattaggtacgaccgtgaaagccccaagg
tatgccattgcctataaatttccggctgaagaagttgtcactaagctgctagatattgtc
ttaaccgtaggaagaaccggtcggattacccccaatgcggtgttggaaccggttcgtgta
gccggtactagtgtatcagcagcacagctgcataatgaggatatgatcaaggaaaaagat
attcgtattcaggacgatgttgttgtgcgcaaagccggagatatcattccggaagttgta
cggccattgatcgagcgtcgcaacggaacacaggcgcgttatgtgttccctaaggaatgt
ccggtatgcggcagtgcgttagtgagattgagcgatgaagcagcgcattattgtatcaat
caggattgcccggcccgcgttgtggaaagtattatccattttgccagtcgtgatgccatg
gatattgataccttaggcgataaaaaagtcgaattcttccataaggaagggttgttaaat
acgatcgaggatatttatcatttaaaagatcataaagaaacaattttacagatggaaggc
tttaaggaacgttcttatcaaaaacttattgatgctattgaagcaagcaaacagaatcct
ttagaggatttggtctatggcttaggcattcgtcaggttggcaaaaaagcagccaaagtc
ttggcaaaacatttccttacgatggagaaacttatggccgcaagtgaagaagagctggtt
gctatcaaagatattggcgatattacagcgcaaagtatcgtggccttcttccgagaacct
aagaatgtggaattgattgatcatctgcgtggctttggtttacgtatggatagtgaggaa
gaaatcattcaggaaagtatgttcactggtaagaccgttgtcttaactggaagtttgcaa
cagatgacacgcaatgaagctaaggagcttttagaatccttaggtgctaatgtgagtggc
tctgtatcaaaaaagacagatctggtcatttatggcgaagctgccggcagtaaactgaca
aaggcgcaaagcttaggcgttgcgacgatggatgaagcaacctttttacaggaggtgaag
acatcatga
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