Leuconostoc citreum: LCK_00477
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Entry
LCK_00477 CDS
T00663
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lci
Leuconostoc citreum
Pathway
lci03030
DNA replication
lci03410
Base excision repair
lci03420
Nucleotide excision repair
lci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCK_00477 (ligA)
03410 Base excision repair
LCK_00477 (ligA)
03420 Nucleotide excision repair
LCK_00477 (ligA)
03430 Mismatch repair
LCK_00477 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lci03032
]
LCK_00477 (ligA)
03400 DNA repair and recombination proteins [BR:
lci03400
]
LCK_00477 (ligA)
Enzymes [BR:
lci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCK_00477 (ligA)
DNA replication proteins [BR:
lci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCK_00477 (ligA)
DNA repair and recombination proteins [BR:
lci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCK_00477 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCK_00477 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCK_00477 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCK_00477 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACA82310
UniProt:
B1MXQ8
LinkDB
All DBs
Position
501697..503742
Genome browser
AA seq
681 aa
AA seq
DB search
MLPEFTPVNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQ
FPQFVTPDSPTQNVGGAKVKSGLAKVVHPAPMLSLGDVFSLEELQEWDERTTKTLGFQSE
YNLELKIDGLAVALTYVDGKLVQASTRGNGSIGEDVTANVKTIRSIPQTLTEPITIEVRG
EIYMPKSSFATLNKQREADGLEPFANPRNAAAGSLRQLNVAITKKRELSAFVYYTADPDA
IGVTTQSGALERFAALGLPTDDHNRVIATMADIDAYIAEYTSQRERLAYGIDGVVVKVNQ
LDNQLDLGHTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPVQLAGTTV
QRASLHNPDYLNAKDIRIGDTVTLHKAGDIIPEIGQVLLAERPANNQVYDIPTFCPACHS
ELVHLDGEVALRCINPFCVAQIQEKLTHFASRNAMNIDGMGPRVVSQLLKANYIQDVASI
YRLQETQLLSLDKFKEKSVTNLLSAITTSKSNSLERLLFGLGIRMVGAKAARLIAEKFKT
LQAIADASVIDIASIAGIGETIALSVVQYFKTPEAKQLLIELQEAGVNQTYLSDVIVDET
SFFYGKKIVLTGKLEKGSRTEATKWLQDHGAQVTGSVSAKTDLLIAGEDAGSKLDKANAL
GVTVWDEQAFIEAQAKEGTDK
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgttaccagaatttacaccagtgaataatttaaccacgcagatggcacagcaagaaatt
gccactttgcaaaaaagacttaccgattatggtgtagcatactatgaagaagatgcgcca
cttgttgaagattacatttatgacgcgttttatgctcgactagtgttactagaagcacag
tttccacagtttgtgacacctgattcgccaacacaaaatgttggtggcgcaaaagttaaa
tcaggattggcaaaagttgttcatccggcaccaatgctatcgttaggggacgtttttagt
ttagaggagttgcaagaatgggatgaacggacaacaaaaactttgggttttcaatctgaa
tataatttagagttgaaaattgatggtttagctgtcgcactaacttacgttgatggtaaa
cttgtacaagcttctacgcgtggtaatggtagtattggagaagatgttacggcgaatgtg
aaaacaattcgtagtattcctcaaacgctaactgagccaataaccattgaggtgcgcggc
gaaatttatatgcccaaatcaagctttgcaaccttaaacaaacagcgtgaggctgatggg
ttagagcccttcgctaatccacgtaatgctgcagcgggttcgctaagacaattaaacgtt
gctatcacgaaaaaacgtgagttatcagcttttgtttactatacagctgatccagatgcc
attggggtaacaacacagagcggtgctctagagcgctttgcagcgcttggtttaccaacg
gatgaccataaccgtgtcatcgccacaatggctgatattgatgcctatattgctgagtat
acctcgcaacgtgagcgattggcttatggcatagatggtgtggttgttaaagtcaatcag
ttagacaatcaactcgatttaggacacactgttaaaattccacgttgggcaattgcttat
aaatttccacccgaagaggctttgactgttgtgcgtgacatcgaatggacagtcggccgt
actggggcagttacccctactgctgtgatggatccagtccaattagccggcacaactgtg
cagcgcgctagcttgcacaatccagattatttgaatgccaaagacattcgaataggagac
acagtaactttgcataaagctggcgatattattccagaaattggacaagtgctgttagct
gagcgaccagcaaataatcaggtatatgatatcccaacattttgtccggcatgtcactca
gagttagtgcacttagatggggaagtggccttgagatgcattaacccattttgtgtggca
caaatccaagaaaagctcacacattttgcttctcgcaatgccatgaatattgatggtatg
ggtcctagagttgttagtcagttgctcaaggccaattatattcaagatgtggcttcgata
tatcgtcttcaggaaacacaactgctttctttagacaagtttaaagaaaaatctgtgacc
aatcttttatctgcaattacgacgtcaaaaagtaattcgttagaacgtttgctttttggc
ttgggtattcggatggttggtgctaaggccgcaagactgattgcagaaaaatttaaaacg
ttacaagccatagctgatgcatcagtaatcgatattgctagtattgcgggtattggtgaa
acaattgcgctttcagtggtacaatattttaaaacacctgaagccaagcaattgctgatt
gaattacaagaagctggtgtcaaccaaacctacttatctgatgtcatcgttgatgaaacg
tcatttttctatggtaaaaagattgttttaactggtaaactagaaaagggtagtcgtacc
gaagcaacaaagtggctacaagatcatggtgcacaggtcacggggtcagtttcagccaag
acagacctgttgattgctggtgaagacgccggtagtaaattagataaggctaatgcgctt
ggtgtgacagtttgggatgagcaggcgtttattgaagcacaagcaaaagagggtactgat
aaatga
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