Novilysobacter ciconiae: INQ41_08045
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Entry
INQ41_08045 CDS
T08092
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcic
Novilysobacter ciconiae
Pathway
lcic03030
DNA replication
lcic03410
Base excision repair
lcic03420
Nucleotide excision repair
lcic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
INQ41_08045 (ligA)
03410 Base excision repair
INQ41_08045 (ligA)
03420 Nucleotide excision repair
INQ41_08045 (ligA)
03430 Mismatch repair
INQ41_08045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcic03032
]
INQ41_08045 (ligA)
03400 DNA repair and recombination proteins [BR:
lcic03400
]
INQ41_08045 (ligA)
Enzymes [BR:
lcic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
INQ41_08045 (ligA)
DNA replication proteins [BR:
lcic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
INQ41_08045 (ligA)
DNA repair and recombination proteins [BR:
lcic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
INQ41_08045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
INQ41_08045 (ligA)
MMR (mismatch excision repair)
DNA ligase
INQ41_08045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
INQ41_08045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
VMAP-M8
Zn_ribbon_RRN7
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QOW18659
UniProt:
A0A7S6ZRN4
LinkDB
All DBs
Position
complement(1771005..1773350)
Genome browser
AA seq
781 aa
AA seq
DB search
MSAPDPAARVAELRRQLDDASYRYYVLDDAAIPDAEYDALLRELEGLEAAHPELAGADSP
TQRVGAPPSGAFASVTHAIPMLSLGNAFSDDEVADFVQRIEQRLERSDPVFSVEPKLDGL
AISLRYEDGRFVQGATRGDGATGEDVTANLRTVKAIPLALRRTDWPAVLEVRGEVYMPLA
GFHRYNERMRAEGGKPLANPRNGAAGSLRQLDPRITARRPLAFYAYAVGLVEGAELPPTH
SATLRQLRDWGFPVSAESRVATGLAGLLAYYRDIGERRDRLAFDIDGVVYKLDDYAGQLE
LGFVSRAPRWALAHKFPAQEQSTVLEAIEVNIGRTGAATPLARLTPVQVGGVEVSRATLH
NADQVARLDVRVGDTVIVRRAGDVIPEIVRVVPGMRAPDAQPWQMPTVCPVCGSDLVREE
GGVVWRCSGELICPAQRKEAIEHFASRRAMDIDGLGERYVEDLVDFGYVTSVADLYTLSL
DDLLEMKCRGDERDGTTPDTVRAGKVATRWAENLIAAIQGSRRTTLARYLFGLGIQHVGE
STAKALAEWFGDLAVIRRLPWPLFKRVPDIGSEVAHSIGQFFDQAGNQKVIDELLAGGVE
ITDARPPSAQLRGALGLADLLVDLEIPKLTRLRAEQLAGVFAEASALLDAPVHRFIAAGL
PNDTASALETWLEDAENAGLLARCGEAIATLEKLIPEADATSAGPLEGRTVVLTGTLAAM
TRDEAKSRLEALGAKSAGSVSKKTGFVVAGEAAGSKLAKAEELGIEIWDEAKLLAFLGKH
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgcccgatcccgccgcccgcgtggccgagctgcgccgtcagctcgacgacgcc
agctaccgctattacgtcctcgacgacgcggcgattccggacgcggagtacgacgccctg
ctgcgcgagctggagggcctggaggcggcccatcccgaactggccggcgcggattccccg
acccagcgcgtcggtgcgccgccgtcgggtgccttcgccagcgtcacccacgccattccc
atgctctcgttgggcaacgccttcagcgacgacgaggtggccgatttcgtccagcgcatc
gagcagcggctggagcgcagcgacccggtgttttcggtggagcccaagctggacggcctg
gccatcagcctgcgctatgaggatggccgcttcgtccagggcgcgacccgcggcgatggc
gccaccggtgaggacgtcactgccaacctgcgcacggtcaaggcaatcccgctggcactg
cggaggacggattggccggcggtgctggaggtccgtggcgaggtctacatgccgctggcg
ggcttccatcgctacaacgagcgcatgcgcgccgagggtggcaagccgctggccaacccg
cgcaacggcgccgccgggtccctgcgacagctggacccgcgcatcaccgcgcgccggccg
ctggcgttctacgcctacgcggtcggcctagtggaaggcgccgagctgccgccgacgcac
tcggcgacgctgcggcaactgcgcgactgggggttcccggtcagcgcggagagccgcgtc
gccaccggcctggccggccttctggcgtactaccgcgatatcggcgagcggcgcgaccgc
ctggccttcgacatcgacggcgtggtctacaagctcgacgactacgcggggcagctggaa
ctgggttttgtctcgcgcgccccgcgctgggcgctggcgcacaagttcccggcccaagag
cagtccacggtactggaggccatcgaggtcaacatcggtcgcaccggtgcggcgacgccg
ctggcccggctcaccccggtgcaggtcggcggggtcgaggtcagcagggcgaccctgcac
aacgccgaccaggtggcccggctggacgtccgcgtcggcgacacggtgatcgtgcgtcgc
gccggcgacgtgattcccgagatcgtgcgcgtggtgcccggcatgcgcgcgccggatgcg
cagccctggcagatgccgaccgtgtgcccggtgtgcggctccgatcttgtgcgcgaggag
ggcggggtggtctggcgctgctccggtgagctgatctgcccggcccagcgcaaggaggcg
atcgagcatttcgcctcacgccgggccatggacattgacgggctgggcgagcgctacgtc
gaggacctggtggatttcggctacgtcacttccgtcgccgacctgtacacgctgtccctg
gacgacctgctggagatgaagtgccgcggtgacgagcgcgacggcacgacgccggacacc
gtcagggcgggcaaggtggcgacccgctgggcggagaacctgatcgcggccatccagggc
agccgcaggacgaccctggcgcgctacctgttcggtctgggcatccagcacgtcggcgag
agcaccgccaaggcgctggcggagtggttcggcgatctggcggtgatccggaggctgccg
tggccgctgttcaagcgggtgcccgacatcggctcggaggtggcccattcgatcggccag
ttcttcgaccaggcgggaaaccagaaggtgatcgacgagctgctggctggcggcgtcgaa
attactgacgcccggccaccgtccgcgcaattgcggggcgcactcgggctggccgacctg
ctggtggacctggagatcccgaaactcacccgcctgcgcgccgagcagctggcgggcgtc
tttgccgaggcgtccgcgctgctggacgcgcccgtgcaccgcttcatcgccgccggcctg
cccaacgacaccgcctcggcgctggagacctggctggaggacgcggaaaacgccggcctg
ctggcgcggtgcggggaagcgattgcaacgctggagaagttgattcccgaagcggatgcc
accagcgccggtccgctggaaggtcgaaccgtcgtgctcaccgggaccttggccgcgatg
acgcgcgacgaggcgaaatcgcgcctggaagcgctgggcgcgaagtcggccggcagcgtg
tcgaagaagaccgggttcgtggtcgctggcgaggcggccggttccaagctggccaaggcc
gaggaactcggcatcgagatctgggacgaggcgaagctgctggccttcctcggcaagcac
gagtga
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