Latimeria chalumnae (coelacanth): 102353236
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Entry
102353236 CDS
T02913
Symbol
CACNA1F
Name
(RefSeq) calcium voltage-gated channel subunit alpha1 F
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04010
MAPK signaling pathway
lcm04020
Calcium signaling pathway
lcm04260
Cardiac muscle contraction
lcm04261
Adrenergic signaling in cardiomyocytes
lcm04270
Vascular smooth muscle contraction
lcm04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102353236 (CACNA1F)
04020 Calcium signaling pathway
102353236 (CACNA1F)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
102353236 (CACNA1F)
09153 Circulatory system
04260 Cardiac muscle contraction
102353236 (CACNA1F)
04261 Adrenergic signaling in cardiomyocytes
102353236 (CACNA1F)
04270 Vascular smooth muscle contraction
102353236 (CACNA1F)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcm04040
]
102353236 (CACNA1F)
Ion channels [BR:
lcm04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
102353236 (CACNA1F)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
102353236
NCBI-ProteinID:
XP_014349652
LinkDB
All DBs
Position
Un
AA seq
1672 aa
AA seq
DB search
MDPPALGLGTPSAGHETRYPGKPPNLGEEAELESNPGEEATLTWQLSMDANGMDTLNSTT
SSSVHRKRQHSKQHKIQGNATTNRAPRALFCLHLNNPIRRACISIVEWKYPSRYRLFLLL
DGWTLTSLIVPSPGYDFGAEEEPAPCAFSGHGRQCTINGTECRGKWEGPNGGITNFDNFF
FAMLTVFQCITMEGWTDVLYWMQDAMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSK
EREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIEPDNEDEENPGRVTLADLKDKKK
GKFGWFSHSTETHSNFVLSSFIFFFFFHVSSSHPLLQNSYPRFDPGSRQTRFLSRVLSLP
NSETASVNTENVAEEEEEHTDCCSRCLRRLRRWNRYGRRKCRAAVKSVPFYWVVLLLVFL
NTLTIASEHYNQPDWLTQIQGYANKVLLSLFTCEMLLKMYSLGLQAYFVSFFNRFDCFVV
CGGIMETILVEFEIMSPLGISVLRCVRLLRIFKVTRHWASLSNLVASLLNSMKSIASLLL
LLFLFIIIFSLLGMQLFGGKFNFDETMTKRSTFDTFPQALLTVFQILTGEDWNVVMYDGI
MAYGGPYFPGMIVCIYFIILFICGNYILLNVFLAIAVDNLADAETVTTNSKEGNGKERGE
KNGENGDVKAQCDEEDESEAEGRDWTTVFCFWVFRIRVGCHALIHHHIFTNLILVFIILS
SISLAAEDPIRAHSFRNHILGYFDYAFTSIFTVEILLKMTAYGAFLHKGSFCRNWFNLLD
LLVVSVSLISFGIQSGKFYSCTDEAKHTPEDCKGTFIVYKEGDVSHPIVKTRIWHNNEFT
FDNVLSGMMALFTVSTFEGWPALLYKAIDANTENRGPIYNYRVEISIFFIVYIIIIAFFM
MNIFVGFVIITFREQGEQEYKNCELDKNQRQCVEYALKAQPLRRYIPKNRYQYKVWYMVN
STGFEYIMFILILLNTITLAMQHYEQSKSFNYTMDILNMVFTGLFTVEMILKIVAFKPKH
YFCDAWNTFDALIVVGSVVDIAVTEVNYVSDLNAPELTCPCHSCICRGRIKHLDVVTLLR
RIQPPLGFGKLCPHRVACKRLVAMNMPLNTDGTVTFNATLFALVRTALKIKTEGNHEQAN
EELRIVIKKIWKRMKQKILDEVIPPPEDEEVTVGKFYATFLIQDYFRKFRKRKEKGLLGA
EPATNNSKALQAGLRTLQDLGPEIRRALSCDLDEEEEELDEAGDEEDAVYKDSDHVLGTA
HVSMDRRSSKSSVAAVSVHSGVSGDGGDAVPGGILSHHRISVTSLPKTANGAAQHEQSDT
GGAEEEIKSLQTKPPGERARKTTAAGRDSSEGYLPSAHQEERVSGEELTEENFSGEQGYY
SRDEDTESTASRDRQLYVEDMLYDRHMSGPLSYQRCGNVTKSYPHRRPSTRRRLLPPTPT
GRKPAFNIQCLRRQGSSDDIPIPGTYHQNSPPCRVRAQTYGSYDSRRSSSHSSTGSSHSW
ATPPKRGRLLYAPLILVEDDIWEKKNSSSLPPLSRVGWYTEEAESPYHAYAKLHVPGHLK
QDYSEKRGSADSLVEAVLISEGLGLYAKDPKFVAFAKREIADACHMTIDEMESAATDLLS
RNLKNSRNSAFRHGAGREWDLSTMGPVYSDEETIRSKEEEDLADEMTCVTSF
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atggatccaccagcccttggactaggaactccgagtgcagggcatgaaaccagatatccc
ggtaagcctcccaacctgggagaagaggcagagctggagtcgaacccaggcgaggaggcc
acgctgacatggcaactctccatggacgccaatggcatggacaccctgaactccaccaca
agctcctcggtgcatcggaagcggcagcactccaagcagcacaagatccaggggaatgcc
accacgaaccgcgccccccgtgccctcttctgtctccacctcaacaaccccatccgcagg
gcctgtattagcatcgtcgagtggaagtatccttctaggtatcggctgtttttgcttttg
gatggatggactctcaccagccttatagtaccctcccctggttatgattttggagcagag
gaggagcccgccccctgtgcgttttcaggacatggcagacagtgcacaatcaacggcacg
gagtgcaggggcaagtgggagggccccaacggagggatcacaaactttgataacttcttc
tttgccatgttgacggtgttccaatgcattaccatggagggatggacggacgtcctctac
tggatgcaggatgcgatgggttacgagctgccctgggtctactttgtcagcctggtcatc
tttggctccttcttcgtcctcaacttggtgttgggcgtgctgagcggtgagttctccaag
gagagggagaaagcgaaggcgcgaggagatttccagaagttgcgggagaagcagcagctg
gaggaagacctgaagggctacctggactggatcacgcaggcggaggacattgaaccagac
aatgaggatgaggagaatcccggccgcgtcaccctcgcagacctgaaggacaagaagaag
ggaaagtttggctggttcagtcactccacggagacccacagtaactttgtgctttcttct
ttcatctttttttttttttttcacgtgagctcctcccaccctctattgcagaattcctat
cctaggtttgaccccggctccagacaaacccgattcctatcccgagttttgagcctccca
aacagcgaaacggcgtctgtcaacacggagaacgtggcagaggaggaggaggaacacaca
gactgctgctctcggtgcctccgccgtctccggcgctggaaccggtacggtcgcaggaag
tgccgcgccgccgtgaagtcggtccctttctattgggtggttctgctgctggtcttcctc
aacactttaactatcgcctcagagcactacaaccaacctgattggctcactcagattcaa
ggctatgcaaacaaagtgctcctgtctctctttacctgtgagatgctgctgaagatgtac
agcctggggctgcaggcctattttgtctccttctttaatcgctttgactgctttgtggtg
tgcggtgggatcatggaaaccatcctggtggagtttgagatcatgtcgccgttgggcatc
tctgtgctgcgctgtgtgcgcctgctgcgcattttcaaagtgaccagacactgggcctcg
ctcagcaacctggtggcatccctgctgaactccatgaagtccattgcttccctgcttctc
ctcctcttcctcttcatcatcatcttctccctcctggggatgcagctcttcggcggcaag
ttcaacttcgacgagactatgaccaaacgtagcaccttcgacaccttcccacaggcgctg
ctcactgtcttccagattttgacgggagaagactggaacgtggtgatgtatgatgggatc
atggcgtatggaggcccctacttccccggcatgatcgtctgtatttacttcattattctt
ttcatctgtggaaactatattctgctgaacgtgttcttggccattgctgtggacaacctg
gcggacgcagagactgtgaccaccaactcaaaggaagggaatggaaaagagagaggagaa
aagaatggagaaaacggagatgtaaaggctcaatgcgatgaggaagacgaaagtgaagca
gaaggtagggactggaccaccgtgttttgtttctgggtttttaggattcgggttggatgc
cacgccctcatacaccatcacatcttcaccaacctcattctggtttttatcattttgagc
agtatatcgctggcggccgaggaccccatccgcgcccactccttcaggaaccacattctt
gggtactttgactacgctttcacctccatcttcactgtggaaattttactgaagatgact
gcatacggtgccttcctacacaagggctccttctgccgcaactggttcaacctgctggac
ctgctggtggtcagcgtctcgctcatctccttcggaatacagtcaggcaagttttacagc
tgcactgatgaagctaagcacacgccggaggactgcaaaggcaccttcatcgtgtataag
gaaggcgatgtcagccacccaatagtgaagacgcgaatttggcacaacaacgagttcact
ttcgacaacgtgctctctgggatgatggcgctgttcactgtctccaccttcgagggatgg
cctgccctcctttataaagctatcgatgccaacactgagaacagaggtcccatctacaac
taccgggtggagatctccatcttcttcatcgtctacatcatcatcatcgcctttttcatg
atgaacatctttgtggggtttgtcatcatcaccttccgggaacaaggagagcaggaatac
aagaactgtgaactggataagaaccagcgccagtgtgtggagtacgctctgaaggcccag
cctctgcgacggtacattccgaagaatcggtatcagtacaaagtgtggtacatggtgaac
tccacgggcttcgagtacatcatgttcattctcatcctcctcaacaccatcaccctggcc
atgcagcactatgagcagtccaaatccttcaactatacgatggacattttgaacatggtt
ttcactggcctcttcactgttgagatgattctgaagatcgttgctttcaagcccaagcac
tatttctgtgacgcttggaacacctttgacgctctgatcgtagtcggaagcgtggtggat
atcgctgttaccgaggtcaattatgtttctgatttaaatgctcctgagctcacctgccca
tgccactcttgcatctgcaggggtcgaatcaaacacctggacgtggtgaccctcctgaga
aggattcagccacccctgggctttgggaagctgtgcccgcatagggtggcatgcaagagg
ctggtggcgatgaatatgcccctgaacacagatggcactgtcaccttcaatgccaccctc
ttcgctctggtccgcaccgccctcaagatcaaaaccgaaggaaaccatgaacaggccaac
gaggagctgaggatagtcataaagaaaatctggaaacgaatgaagcagaagatcctggat
gaagtcatcccacctcccgaggacgaagaagtgactgtgggaaaattctacgccacattc
ctgattcaggattacttccgaaaattccggaagcgaaaggagaaggggctgctgggagct
gaaccggcaaccaataactcaaaggcattgcaggctggtctgcgaaccttacaggacctc
ggaccagagatccgccgtgccctgtcatgcgacctggacgaggaagaggaggagctcgac
gaggcaggtgatgaagaagatgcagtttacaaggactccgaccacgtgctggggaccgcc
cacgtgtccatggatcgccggagctccaagtcctcggtggcagccgtgtcggtccactct
ggggtgagcggcgatggtggcgacgcggtgcctggcggcatactgtcccaccacaggata
tcggtcaccagcctccccaagaccgccaacggcgccgcgcagcatgagcagagcgacacg
ggaggggcggaggaggagattaagtctctgcagaccaagccccctggagagagagcgagg
aaaaccaccgcagctggaagagactccagcgaggggtacctgccgtccgctcaccaagag
gagagggtatctggggaggagctgacagaggagaatttctcgggagagcagggatactac
agtcgggatgaggatacagagagtacggcttccagagacaggcagctgtatgtggaagac
atgttgtatgaccgacacatgtccggtcccctgtcgtaccagcgctgtggcaacgtcaca
aagagctacccccacaggaggccgtccacccggagaaggctactcccgcccacaccaaca
ggtcgcaagccggcatttaacattcagtgtttgcgtcgacaaggaagcagtgatgatatt
ccgattccggggacgtaccatcagaattccccgccctgccgtgtgagagctcagacttac
ggaagttacgattcccggcgcagtagcagtcattcatccacaggctcctcccactcctgg
gccacgccgccgaagcgcgggcgcctgctctacgccccgctcatcctggtggaggacgac
atctgggagaagaagaacagcagctcgctgccgccgctctcccgggtgggctggtacaca
gaagaagcggagagcccctaccacgcctacgccaagctgcacgtccccggccacctgaag
caggactacagcgagaagcggggtagcgccgacagtctggtggaagcggtgttaatttca
gaggggctaggattgtatgccaaggaccccaagttcgtcgcgttcgccaagcgcgagatc
gccgacgcatgtcacatgaccatagacgagatggaaagcgctgccacggacttgctgagc
cggaatttgaagaacagcaggaacagtgccttccgtcacggagcaggcagggagtgggac
ctctccaccatggggcctgtctacagcgacgaggagacgattcgcagcaaggaggaggag
gacctggcggatgagatgacctgtgttacttccttttag
DBGET
integrated database retrieval system
