Latimeria chalumnae (coelacanth): 102353931 Help Entry 102353931         CDS       T02913                                  Symbol TRAF6 Name (RefSeq) TNF receptor associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism lcm  Latimeria chalumnae (coelacanth) Pathway lcm04010   MAPK signaling pathway lcm04120   Ubiquitin mediated proteolysis lcm04140   Autophagy - animal lcm04144   Endocytosis lcm04620   Toll-like receptor signaling pathway lcm04621   NOD-like receptor signaling pathway lcm04622   RIG-I-like receptor signaling pathway lcm05132   Salmonella infection lcm05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:lcm00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     102353931 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     102353931 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     102353931 (TRAF6)    04140 Autophagy - animal     102353931 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     102353931 (TRAF6)    04621 NOD-like receptor signaling pathway     102353931 (TRAF6)    04622 RIG-I-like receptor signaling pathway     102353931 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     102353931 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     102353931 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:lcm04131]     102353931 (TRAF6)    04121 Ubiquitin system [BR:lcm04121]     102353931 (TRAF6) Enzymes [BR:lcm01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      102353931 (TRAF6) Membrane trafficking [BR:lcm04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     102353931 (TRAF6) Ubiquitin system [BR:lcm04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     102353931 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 zf-TRAF_2 U-box TRAF3_RING SlyX RING_XB3-XBAT31 DM zf-RING_11 DUF16 DUF7310 DUF2790 HMMR_N Motif Other DBs NCBI-GeneID:  102353931 NCBI-ProteinID:  XP_005987021 Ensembl:  ENSLACG00000003168 UniProt:  H3A1N5 LinkDB All DBs Position Un AA seq 559 aa AA seqDB search MSLLEMDSSSEVDSCESKCCSSMACANSIGAKEDSMGGCCAGGATAAACFHNSLSEETQG YDVEFDPPLENKYECPICLMALREAVQTPCGHRFCRACITKSLRDAGQKCPVDNEILLES QLFPDNFAKREILSLTVKCPNRGCLLKMELRKLEEHQECCEFSTVECCQCLGRYWRSELE EHMSLHCLRRQVTCENCAATMTYEDKEGHDQNCPLANVTCDYCNTELIREQMPNHCDMDC PKAPVPCTFSTFGCPEKMQRNDLACHLQEFTQVHMRMMAQTLRSMSIGATSMMTPVSALE ALRFEPMPPPAPSLSPSSHSASCDCSQAVQMLRETIQQLEGRLVRQDHQIRELSAKMETQ SKQMGELRCVIRVLEERTAELEAQQCNGIYIWKIENFSTQLHLQEAERPVVIHSPGFYTG KPGYKLCLRLHLQTPSAPRCANFVSLFVHTMQGEYDSYLPWPFQGTIRLSILDQSEGPMR QNHEEVMEAKPELLAFQRPTSQRNPKGFGYVTFMHLTALKQRTYIKDDTLLVRCEVMTRM DMNCLRREGFQPRSTDGGL NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt atgagtttgttagaaatggacagcagctccgaagtggatagttgtgaaagcaagtgctgt tccagcatggcgtgcgccaacagtatcggggcgaaggaggacagcatgggcggctgctgt gccggtggagcgacggcggcagcttgctttcacaattcgctgagcgaagaaacccaaggg tacgacgtggagttcgacccgcccctggagaacaagtacgagtgcccaatctgcctgatg gcgctgcgggaggcggtgcaaacgccatgtggtcaccgcttttgcagggcgtgtattacc aagtcactcagagatgctggtcagaagtgcccagtagacaatgaaattctcctagaaagc cagcttttcccagataactttgcaaaacgagaaatcctttctttaactgtcaaatgtcca aacagaggctgtcttctgaaaatggagctgagaaaactggaggagcaccaggagtgctgt gagtttagtacagtagagtgttgtcagtgtctggggaggtactggagaagtgagctggag gaacatatgtcactacactgtctgagacggcaagtcacctgtgaaaactgtgcagcaaca atgacctacgaggacaaagagggtcatgaccaaaactgtccgttggcaaatgtgacatgc gattactgcaacacagaactcattagagagcagatgcctaaccactgtgacatggattgt cccaaagctccagtgccctgcaccttcagcacctttggctgtcccgaaaagatgcagagg aatgatctggcctgccacttgcaggagttcacgcaggtccacatgcgcatgatggcacaa acccttcgaagcatgagcatcggtgccacatctatgatgaccccggtatcggccctcgaa gcactgcgttttgaacccatgcctccgcctgcaccatcgctgtcaccgtcatctcattct gcttcatgcgactgctcccaagccgtgcagatgctgagggagaccatccagcagctggag ggccgcctggtgaggcaggaccaccagatccgagagctgtcagccaagatggagactcag agtaagcagatgggggagctgcgctgtgtcattcgggtgctggaagagagaactgcagag ctggaagcgcaacagtgcaacggcatttacatctggaagattgagaacttcagcacccag ctgcatctccaagaggcagagcgtcccgttgtcatccacagtcccggtttttacaccgga aaacccggatacaaactgtgcttgcgccttcaccttcagacaccaagcgcaccgcgctgc gccaactttgtgtcactctttgtgcacactatgcagggggagtacgacagctacctgccg tggcctttccaggggaccatccgcttgtccatccttgatcagtcagaggggcccatgagg cagaaccatgaggaagtaatggaggcaaaaccagagctcttggccttccagagacccacc agccagcgcaacccaaaaggctttgggtatgtgacgttcatgcacctgactgcgctgaag cagcggacttacataaaagatgacacactcctggtacgctgtgaggtcatgacgcgcatg gacatgaactgtctgcggagagaaggcttccagccacgcagtaccgacgggggtctatag

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