Latimeria chalumnae (coelacanth): 102363313
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Entry
102363313 CDS
T02913
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102363313 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102363313 (LIG4)
Enzymes [BR:
lcm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102363313 (LIG4)
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102363313 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
SSPI
Motif
Other DBs
NCBI-GeneID:
102363313
NCBI-ProteinID:
XP_005997060
Ensembl:
ENSLACG00000003282
UniProt:
H3A217
LinkDB
All DBs
Position
Un
AA seq
911 aa
AA seq
DB search
MSAEASTDSLPKKTVASQVPFADLCSTLEKIQKSKLRQDKTKYFGDFLDSWRKFHNALHK
NDLGTTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIDVLGLPKEGKDALKLLNYRTP
TSTQNEAGDFAVIAYFVLKQRCPNQGILTIQQVNCLLDSIANNNAVKGKDLMKKSLQQLI
TQSSALEQKWLIRMILKDMKLGISQQTIFHLFHPDAAELHNVTTDLDKVCRQLHDPSVSL
SDVSIMMFSAFKPMLAAIANIKQIEKQMNNQSFYIQMKLDGERMQLHKDGDVYKYFSRNG
FDYTQQFGAAPLDGSLTPFIHNVFKDTVQNCILDGEMMAYNPNTQTFMQKGSKFDIKRMV
EDSELQTCYCVFDVLMVNDQKLAQETLRRRHEILQTVFTPTQGRIHIVQKIEARTKKEVV
DALNDAIDNREEGIMVKDPMSVYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGL
RSGMMSHFLCAIAETPPSGKKPSVFHSFCRIGSGYTMEELYNLGLKLAKYWKPYSKKNPP
PTLLCGTEKPEFYLEPSNSVIVQVKAAEIVTSDMYKTGCTLRFPRIEKIREDKDWYECMT
LNDLDQLRDKASGKLASKHVDVDDVEPGKKRKIMPKVKKVIGIMEQFKAQDLSNVSKVSN
IFEDVEFCVINGNNEHSKTELEKGIAECGGLVVQNPGPETYCAIAGTENVRVKNITSSNK
HDVVKVEWLLDCLKKREFVPWQPCHMIHMSPSTEQHFACEYDRYGDSFYADTAEHQLKEV
FLRISKTKLKVRLDTIAELEQRYSWDESPLRMFREYVVYVDLYYIISDTAAKIQGTGLDI
RVLELRFHGAKVVTQLDECVSHVIVSDDHSRVSELKALRRTFKKKFKIVSDLWVIDSVKT
GCVQDENTYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaagcttctacagattctttgcctaagaagactgtggcatcccaagtccct
tttgctgatctttgctcaacattagaaaaaatacagaaaagcaaattgcggcaagacaag
accaaatattttggagattttctggattcctggcgaaaatttcacaatgcacttcataaa
aatgatcttggaactacagattccttttacccagcaatgcgacttattcttcctcagttg
gaaagggaaagaatggcttatggaataaaggaaactatgcttgccaagttgtatattgat
gttctgggtttgcccaaagaaggaaaagatgcactgaaacttctcaactacagaacacct
accagcactcaaaatgaggctggagactttgctgttattgcttattttgttctgaaacag
agatgtccaaaccaaggaatcttaacgatacagcaagtaaactgtcttttagactccatt
gctaataataatgctgtgaaaggaaaagatctcatgaaaaagagtctacaacagcttatc
actcagagctcggctctggaacaaaagtggctaatccgcatgattctcaaggacatgaaa
cttggaataagtcaacaaaccatatttcacctattccatcctgatgcagcagagttgcat
aatgtgacaacagacttagataaggtctgtagacagcttcatgatccttctgtgtccctt
agtgatgtctccataatgatgttttcagcctttaagccaatgcttgccgctatagcgaat
attaaacagattgaaaaacaaatgaacaatcagagcttctacatacaaatgaaacttgat
ggtgaacgaatgcagctgcacaaagatggggatgtgtataagtatttttcccgtaatgga
tttgattacactcagcagtttggtgctgccccactagatgggagtttaactccattcata
cacaatgtatttaaggatactgtacaaaactgtattcttgatggtgaaatgatggcctat
aatcctaacacgcaaacttttatgcaaaagggaagtaagtttgacatcaagcggatggtt
gaagattcagagttgcaaacatgctattgtgtttttgatgtgttgatggttaatgaccaa
aaattagcccaggagaccttaagaaggagacatgagattctccagactgtctttacacca
acacaagggagaatacacatagtacaaaaaatagaagctagaactaagaaggaagttgtt
gatgctttgaatgatgcaatagacaacagggaggaaggaattatggttaaagaccctatg
tctgtttacaagccagataagcgaggagagggatggttaaaaatcaaaccagaatatgtg
gatggcttgatggatgaactggatattttgattgttggaggatactggggaaaaggttta
cgtagtggcatgatgtcccatttcttatgtgctattgcagaaactcctccctctggcaag
aaaccatcagtgttccattccttctgtcgtataggttctggctacaccatggaggaactg
tataatcttggcttaaaactggctaagtactggaaaccctattcgaaaaaaaatccaccg
ccaacgcttttgtgtgggactgaaaaacctgagttttacctagagccatctaattctgtc
attgttcaggttaaggcagctgaaattgtcaccagtgatatgtataaaactgggtgcact
ttgcgatttcccagaattgaaaaaataagggaagacaaagactggtacgagtgcatgaca
ttaaatgacttggatcaacttcgagacaaagcatcagggaagttagcctccaagcatgta
gatgtggatgatgtcgaaccaggaaagaaacggaaaatcatgccaaaagttaagaaagtg
attggaattatggaacagtttaaggcccaagatctttcaaatgtaagcaaggtttctaat
atatttgaagatgttgaattttgtgttatcaatggaaataatgagcactctaaaacagag
ctagaaaagggaatagctgaatgtggtgggctcgtggtgcagaatcctgggcctgagact
tactgtgctattgcgggaacagaaaacgttagagtcaaaaacattacctcctcaaacaaa
catgatgttgtgaaagttgaatggcttttggattgcctgaagaagagagagtttgtgcct
tggcaaccctgccacatgattcacatgtctccatctacagagcaacactttgcttgtgaa
tacgaccgctatggtgatagtttctatgctgacacagctgagcaccaactaaaagaagtg
ttcctgagaataagtaagaccaaattaaaagtgcgtttggacacgattgctgagttagaa
cagcgctactcttgggatgaatctccattaagaatgttcagggagtatgtcgtatatgtt
gacttatattacattattagtgacacggctgcaaaaatccaaggcacaggattagacata
agggtcttggagctacggtttcatggagcaaaagtggtaacacagttggatgaatgtgta
tcacatgttatagtcagtgatgatcattcacgtgtttcggagctaaaggccctccgaaga
acatttaaaaagaagtttaagatagtatcagatttatgggtgattgattcagtaaagaca
gggtgtgtacaggatgaaaatacatatctgatttag
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