KEGG   Latimeria chalumnae (coelacanth): 102367508
Entry
102367508         CDS       T02913                                 
Symbol
SMNDC1
Name
(RefSeq) survival motor neuron domain containing 1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102367508 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcm03041]
    102367508 (SMNDC1)
Spliceosome [BR:lcm03041]
 Complex A
  U2 snRNP components
   U2 related factors
    102367508 (SMNDC1)
 Complex B
    102367508 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    102367508 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067 DUF2730 SH3_Hsr9
Other DBs
NCBI-GeneID: 102367508
NCBI-ProteinID: XP_005998852
Ensembl: ENSLACG00000007784
UniProt: H3AGN9
LinkDB
Position
Un
AA seq 238 aa
MSDDLAKQLAGYKAQLQQVEAALSTDPENEDLLKLQKDLQEVIELTKDLLSTQPTVATAS
SDSTNTVVPSHAWQVGDYCMAVWNEDGQFYKAEIEEIDEENSTAAITFMGYGNADVIPLL
SLKPLEEGGQADDESGGKPKSKKEIIAQQREYKKKKALKKAQRMKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtccgatgatctggcaaaacagttagctggttacaaggctcagcttcagcaggtggaa
gctgcactttcaacagatccagagaatgaagacctgctcaaactacagaaggatttacag
gaagttatagaactaaccaaagacctactgtcaacacaacccactgtagcaacagctagt
tcagacagcactaacactgttgtgccaagccatgcctggcaagttggagattattgtatg
gcagtctggaatgaagatggacagttctacaaggcggaaattgaagagatagatgaggag
aacagcactgctgccatcacatttatgggttatggcaacgcagatgttataccactgctc
agtctcaaacccctagaagaaggaggacaagcagatgacgagagtggtggcaagcccaaa
tctaagaaagagataattgcccagcaaagggagtataaaaagaagaaggctttgaaaaag
gcacagaggatgaaggagcttgaacaggagcgagaggatcagaaagtgaagtggcagcag
ttcaacaacagagcctattcaaagaacaagaaagggcaggtgaagaggagtattttcgct
tctcctgagagtgtgactggtaaagtcggggtggggacgtgtgggattgcagacaagcca
atgacacagtaccaggacacatcaaagtacaatgtgaggcatctcatgccacagtaa

DBGET integrated database retrieval system