Larimichthys crocea (large yellow croaker): 104920634
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Entry
104920634 CDS
T04659
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04010
MAPK signaling pathway
lco04120
Ubiquitin mediated proteolysis
lco04140
Autophagy - animal
lco04144
Endocytosis
lco04620
Toll-like receptor signaling pathway
lco04621
NOD-like receptor signaling pathway
lco04622
RIG-I-like receptor signaling pathway
lco05132
Salmonella infection
lco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104920634 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104920634 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
104920634 (traf6)
04140 Autophagy - animal
104920634 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
104920634 (traf6)
04621 NOD-like receptor signaling pathway
104920634 (traf6)
04622 RIG-I-like receptor signaling pathway
104920634 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
104920634 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
104920634 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104920634 (traf6)
04121 Ubiquitin system [BR:
lco04121
]
104920634 (traf6)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104920634 (traf6)
Membrane trafficking [BR:
lco04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
104920634 (traf6)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
104920634 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
TRAF6_Z2
zf-C3HC4_4
zf-RING_5
RING_XB3-XBAT31
U-box
TRAF3_RING
zf-RING_11
Sina_ZnF
DM
Prok-RING_4
zf-TRAF_2
BLI1
Motif
Other DBs
NCBI-GeneID:
104920634
NCBI-ProteinID:
XP_019128980
UniProt:
A0A977QJH5
LinkDB
All DBs
Position
VIII:complement(4990344..4997110)
Genome browser
AA seq
575 aa
AA seq
DB search
MACIDSNKGSLEEDSYEGAVGGELSGCALAMMEKERESLLSPLESPGTLISSNSSSLQAS
TPLQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDTGQRCPVDNE
MLSEEQLFPDNFAKREILSLTVRCPNTGCAEKMELRHLENHLARCQFATVPCLQCQQSVR
KSHLEEHRTVECQRRPVSCPDCVASFVYEERELHEQQCPFANVTCQYCEMDLIRDQMESH
CDTDCPKAPIACNFNIFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGFSINGTAPKSL
WTLGPSVSPDDQGAAAAAAAAVPACSGPRASASCTSNSTPCQSNEEMQRLREMDGRLVKQ
DHQLRELIILKETQAGQLAELRRRVSMLEETVRELESQQCHGIFIWRLKGFSVHLRNQDA
GVPVVEHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNYISLFVHTMQGAFDGQLTWPFQGT
IRLAILDQGPEAQHHMEVMETKPDLQAFQKPTIQRNPKGFGYVTFLHLHQLSQRAFVKDD
TLLIRCEVTPRFDNMIHREGPAVQPRGPEASVSRD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcattgacagcaataaagggagtttggaggaggacagctatgaaggagctgtt
ggcggagagctgtcaggctgtgcgctggcgatgatggaaaaggaacgggaatcccttctc
agccctttggagagccccggcaccttgatcagcagcaactcctctagtcttcaagcctct
actccactccagggctacgacgtggagtttgacccacccctggagagcaaatacgagtgc
cctatctgcctcatggctttgaggaatgccattcaaacaccctgtggccaccgtttctgc
aagaactgcattgagaaatccattcgtgacacgggacagaggtgccccgtggacaatgaa
atgctgtcagaagagcagctgtttcctgataactttgccaagcgtgagatcctatcgcta
accgttcgctgtccaaacactggctgcgctgagaaaatggagctccgacatttagagaat
catttggcccgctgtcagtttgccaccgttccttgcctgcaatgccagcagtctgtgaga
aagagccatctagaggagcacagaaccgtggagtgccaaaggagacctgtgtcttgtcca
gattgtgtggcaagctttgtttacgaggagagagagctccacgaacagcagtgtcccttt
gccaacgtgacctgccagtactgtgagatggatctcatccgagaccagatggaatctcat
tgtgatacggattgcccaaaagcacccatcgcctgtaacttcaacatctttggatgtaag
gaaaggatgcagcgccacaacctcgcccagcacatgcaggagttcacccagatgcacatg
cgctacatggcggagttcctgcgcggctttagcattaacggcacagcacccaaatctctg
tggacgctaggaccttctgtttcccccgatgaccaaggagcggcggcggcagcagcagcg
gcggtgccagcctgtagcggacccagagcatctgcgagctgcaccagcaactccaccccg
tgtcagtctaacgaagagatgcagaggctcagggagatggacggacggttggtaaagcag
gatcaccagctgcgcgagctcatcatcttaaaagagacacaggctggtcagctcgctgag
ctcaggcgtagggtgtcaatgctggaggagacggtgagggagctcgagtcccagcagtgt
cacggtatcttcatctggcgcctcaaaggtttctctgtccacctgcggaaccaagacgcg
ggcgtgccggtggtcgagcacagcccgggtttctacacgggtcgtccaggctacaagttg
tgcctgcgcttacacctgcagacccccaacgccccgcgctgctccaactatatttccctc
tttgtccacaccatgcaaggagcttttgacgggcagctcacctggccgttccagggcacc
atccgccttgccatcctagaccagggccctgaagctcagcaccacatggaggtgatggag
actaaaccggatctgcaagccttccagaagccgaccatccagcgcaaccccaaaggattt
ggctacgtcacctttctgcacctgcatcagctgagtcagagagcctttgttaaagatgat
actctacttatccgctgtgaggtgacgccgcgttttgacaatatgattcaccgcgaggga
ccggctgtgcagcctagaggacctgaagcctcggtttcaagggactaa
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