Larimichthys crocea (large yellow croaker): 104926707
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Entry
104926707 CDS
T04659
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04115
p53 signaling pathway
lco04145
Phagosome
lco04148
Efferocytosis
lco04350
TGF-beta signaling pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
104926707
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104926707
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
104926707
04148 Efferocytosis
104926707
09143 Cell growth and death
04115 p53 signaling pathway
104926707
09144 Cellular community - eukaryotes
04510 Focal adhesion
104926707
09142 Cell motility
04820 Cytoskeleton in muscle cells
104926707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104926707
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104926707
Membrane trafficking [BR:
lco04131
]
Endocytosis
Phagocytosis
Opsonins
104926707
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104926707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
104926707
NCBI-ProteinID:
XP_010738923
LinkDB
All DBs
Position
XI:complement(6079305..6091549)
Genome browser
AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWTCESARVAESRDDNSVYDLFELIKVPRKNHGVSLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVDLATNHWKNITLFVQEDRAQLYAGCEEVNTAELDA
PIQSILTPETPASAQLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSLTTDTM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTD
ENKLIRNRIGIHNGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCEGEGRQT
EKCQKSPCPINGNWGPWSPWDTCTATCGGGAQTRKRLCNDPAPKYGGKDCVGDAKDTQRC
NKNACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDIDECKEVPDTCFE
FNGVHRCENTDPGYNCLPCPPRYSGPQPFGKGVEQAAAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQVDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacagggatatttttgctattgatgctgtggacctgcgagagtgccagagtc
gcagagagtcgagacgacaacagcgtgtatgacttgtttgagctgatcaaagttcccagg
aagaaccatggggtctccctggtgaaaggagacgacccgtacagccccgcctacaagata
ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctgatcgattct
atccacgccgagaggggattcctcctcctgctcaacttcaagcagttcaaacgtaccagg
ggaagcctcctgaccgtggagaagcgagacggctccggaccggtgtttgagatcgtctcc
aacggcaaagcgaacaccttggacatagttttctccaccgagaacaagcagcaggtggtt
tccattgaagatgtggatctggctacgaaccactggaagaatatcacgctgttcgtgcag
gaggaccgtgcgcagctttacgcgggatgcgaggaggtgaacaccgccgagttggatgcg
cccatccagagcatcctgacgccggagactccggccagcgcgcagctcaggattggcaag
ggagcagtgaaggacaggttcatgggggtcctacaaaacgtgcggtttgtgtttggaaca
acactggatgccatcctccgcaacaaaggatgccaaagctctttgacaactgacaccatg
atcctggagaacctcaatggctcctcagccatcagaacagagtacactggacacaagact
aaagacctgcaaatggtctgtggcttctcctgtgaggacctggtcagcatgtttaaggag
ctgaagggccttggtgtagtggtcaaggagctgtctaatgaactccgccagctgacggat
gagaacaagctgattaggaaccgcattggcattcacaatggcgtctgcatccacaacggc
attgtgcacaagaacagagacgagtggaccgtggacgactgcaccgagtgcacttgtcag
aactctgctactgtgtgccgcaagatctcctgccccctgatcccctgcgccaatgctact
gttcctgatggggagtgctgcccacgctgtggaacaccgagcgactatgcagaggatggc
tggtcgccgtggtctgaatggacccattgttctgtgtcatgtgggcggggcatccagcag
cgtggacgctcttgcgaccgtatcaataacaactgcgaggggacctctgttcagacccgc
gactgctacctccaagagtgtgataagcgcttcaagcaggacggcaactggagccactgg
tcaccctggtcttcctgctccgtcacctgtggtgctggtgtcatcacccgtatccgcctc
tgcaactcccccacccctcagctcggaggcaaggactgtgagggagaaggccgccaaacc
gagaagtgtcagaagtctccgtgcccgatcaatggcaactggggaccctggtcaccgtgg
gatacctgcactgccacctgtggaggcggtgcccagactcgtaaacgcctgtgcaatgac
cctgcaccaaaatacggaggcaaagactgtgttggtgatgccaaagacacccagaggtgc
aacaagaatgcctgtccaattgatggatgcctgtccaacccctgctttgctggagccaaa
tgcaccagtttccctgatggttcctggaagtgtggaaagtgcccagctggctacactggc
aatggtatcaagtgtaaagacattgatgagtgcaaggaggttccagacacttgctttgag
tttaatggtgtgcaccgctgtgagaacacagatcctggctacaactgtctgccttgccct
cctcgctactcaggcccccagccgtttggcaaaggtgtggagcaggctgctgctaagaaa
caggtgtgcacgcctcgtaatccctgcctcgatggaagtcatgactgcaacaaaaacgca
cgctgtaactacctcggacactttgccgatcccatgtaccgttgcgagtgcaagcctggc
tatgctggcaacggtcatatctgtggagaggacacagatctggatggatggcccaatgct
gacctggtttgtgtggagaacgccacctaccactgcaaaaaggacaactgtcccaacctc
cccaactctgggcaggaagattacgataaggacggcattggagatgcttgtgacaatgat
gatgacaatgatggcattcctgacgatagggacaactgtccattcgtgtacaaccccagg
cagtatgactatgaccgcgatgatgtgggtgaccgctgtgacaactgcccctacaatagt
aacccagaccaaacagacactgacaacaacggagagggagatgcctgtgctgtggacatt
gatggagatggcatactgaatgaaaaggacaactgtccctatgtctacaacgttgaccag
agagacacagatctggatggagtgggagacatgtgtgacaattgcccactggaacataat
cctgatcaggtggattcagatgatgaccgtgtaggagacaagtgtgacagcaaccaggac
attgatgaggatggacaccagaacaacctggacaactgcccatacatccctaacgccaac
caagctgaccatgacaaggacggcaagggagatgcctgcgaccatgatgatgacaacgat
ggcattcctgatgacaaggacaactgtagattggccttcaaccctgaccaagtagactct
gatggtgatggtcgtggagacgcttgcaaagatgactttgaccaagacaatgtgcccgac
atctacgacgtgtgtccagagaactttgacattagcgagacagacttccgcaagttccag
atggttcctctagatcccaaaggcacctcacagattgaccccaattgggttgtccgtcat
cagggcaaagagctggttcagaccgtcaactgcgaccctggcatcgctgttggttaccat
gagttcaattcagtggacttcagtgggactttcttcatcaacacagagagggatgatgat
tatgccggctttgtgtttggttatcagtccagttccaggttctatgttgtgatgtggaag
cagattacacagacatactggtcgaacaaacccaccaaggcccagggctactctggcctg
tccattaaagtggttaactctaccactggcccaggagagcacctcaggaatgccctgtgg
cacacagggaataccccaggacaggtccgtactctctggcatgacccaaagaatgttgga
tggaaagacttcactgcctacagatggcatctgattcacagaccgagaacaggacttatt
agagttgtgatgtacgagggcaagaagatcatggcagattctggtagcatctatgacaag
acatatgctggtggcaggctaggtctttttgttttctcacaagagatggtatacttctca
gacctcaagtatgaatgcagagatgtctaa
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