Larimichthys crocea (large yellow croaker): 104930405
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Entry
104930405 CDS
T04659
Name
(RefSeq) protocadherin gamma-C5 isoform X4
KO
K16497
protocadherin gamma subfamily C
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104930405
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104930405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
104930405
NCBI-ProteinID:
XP_010743488
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All DBs
Position
I:complement(34721867..34982370)
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AA seq
985 aa
AA seq
DB search
MDSRQRKRSGGGRLWRLCFYLACLSGASAQLSYSVSEELSPGSIVGNIARDLTLTADKIV
QRRLRVVSESTTQYFEVKPTTGDLVIKQKIDREQLCDLSSACSLHLQILLENPLAIHRVV
VDILDVNDNAPQFSTSNISLEISEAAAPGTRFRLESAQDPDMGTNSLRTYHLAANDFFTL
NVETKSDGSKFPELVVDKALDRETQASFRLLLTAVDGGQPEKSGSTLLLIKILDVNDNSP
VFDEPSKKVKLLENAALGTLVTKLNATDVDSGNNGDISFLFDKYTPERVLNLFSVDSKSG
EIRVKGHVDYEKGSTYHITAQARDGGSPAMEGSCNVIVEIIDVNDNAPEVTLTSVTSPIR
EDSAPETVIALISARDLDSGMNGKVTLTVQPGLPFKLNSAFGMHYSLITAGNLDRETVPE
YTVVIRASDAGSPPLSSQTTFVVKLSDVNDNAPIFSQPSYSVDIPENNAPSSPIATVSAT
DPDLGDNARISYSIIPSMVQGSSISSYVYINPESGHIYSMRSLDHEQLNAFRIEVQARDA
GVPPRTANVTVHVFVVDVNDNAPVLVHPSYPKDKRLQLTVPPSAGPGYFINKFVGIDADS
GHNALLLYSIAPGLNAGMFHIGARTGELRTARQWAEEEAGSTYDIMIIIEDHGKPPKSSS
VNITVTVDEKDTPNNAPASPRHKPFYHPTGMSDITLYLIISLACVSAVSFITFVVLMVRC
LRHRGPGLGDSDCCCYGRHRSSRYHQRPSKDLHLQLNTDGPIRYMEVVGGPQDPHTRTYR
PCYSTISSRSDFVFMKQPMLSHNNTLNMTLSRKHLMNSVSEQKPPNNDWRFTQGQRPGPS
GPHMPYGTHIRWTPKSGTRATGGPEVAMGTGPWPQPPTEAEQLQALMAAANEVSEATATL
GPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQATAQQATQQALPPPQT
SAQPEPPKAAQTPASKKKSTKKEKK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggactccagacagagaaagcgctccggaggagggaggctgtggaggctctgtttttat
ctagcctgcctctccggtgcgtccgctcagctcagctattctgtatcggaggaattaagc
ccgggctctatcgttgggaatatcgctagagatttgactctcactgctgataagattgtt
cagaggaggttgcgggtggtctcggaatccacaacgcagtattttgaggtaaagccgacg
actggggacttggttattaaacaaaaaattgatagggagcaattgtgcgacttaagttca
gcatgttctctacaccttcaaatacttctggagaatcctttagccattcaccgtgtcgtg
gtggacattttggatgtgaatgacaatgcaccgcagttttcaaccagcaacatttctctg
gagatatcagaggcggccgcgccgggcacaaggttccgtttggagagcgcacaagatcca
gacatggggaccaactcgttgcgcacttaccatctcgcagcaaatgacttctttactttg
aatgtggaaactaaaagtgacggcagtaagtttccagagctggtggtggataaagctttg
gacagggagacgcaggcctcgtttcgcctgttgctcactgctgtagatggaggtcagccg
gagaaatctggctcaacacttctgctcattaaaattctggatgtaaatgacaattcaccc
gtctttgacgaaccgtcaaagaaagttaagctattagaaaatgccgcactgggcacttta
gtaacgaaattgaacgcgactgatgtggattcaggtaacaatggagacatatctttcctg
tttgataaatacacaccggaacgtgttctcaacctcttcagtgtggattctaaaagcggg
gagatccgtgtgaagggtcacgttgattatgagaaaggctctacataccacatcacagcg
caggccagagatggtggctctcctgctatggagggttcctgtaacgtcatagtggaaatt
attgatgtgaatgacaacgcaccagaggtgacactgacgtcagtaaccagtcctatcaga
gaggactcggcaccagagactgtgatagcccttataagtgcacgggacttggactctggt
atgaatgggaaggttacattaactgtccaaccaggtttgccatttaaacttaattcagca
tttggcatgcattacagcctcatcactgctggaaacctggaccgtgagactgtcccagag
tacacagtggtcattagggccagtgatgctggttctcctcccctttcatcacaaaccaca
tttgtggtgaagctctctgatgtaaatgacaatgcccccatcttctctcagccttcatac
tctgtggacatcccagagaacaatgctcctagttctcccatcgccactgtttcggccact
gatccagaccttggtgacaatgctcgcatatcctactccatcattcctagcatggtacag
ggctcatccatctcttcttatgtctacattaaccctgagagtggtcacatctatagcatg
cgctctctggatcatgaacagcttaacgctttccgcattgaggtgcaggcccgggatgca
ggggtgcccccacgaacagccaacgtcactgtgcatgtgtttgtggtggatgtgaatgac
aatgcaccagtgcttgtacacccttcctacccaaaagacaaaagattacagctcactgtg
cccccatctgcaggcccagggtacttcataaataaatttgtaggaatagatgcagacagt
gggcacaatgcattgttgctttactccatcgcccctggactgaatgctggcatgttccat
atcggagcacgcactggtgagctccgcacagcccgccagtgggcagaggaggaagcaggc
tcaacttatgacatcatgatcatcattgaggaccatggtaaaccaccaaagtccagttct
gtgaacattacagtaactgtggatgagaaggacacgcccaataatgctccagcaagccct
cgccacaaaccattctaccatcccactgggatgtcggacatcaccctgtacctcatcatc
tctttagcctgtgtatcagctgtgtccttcatcacctttgttgtcctcatggtacgctgc
ctaaggcaccgtggcccagggctgggagactctgactgctgctgctatggtcgtcacaga
tccagccgctaccatcagaggcccagcaaggacctgcacctgcagctgaatactgatgga
cccatacgctatatggaggttgttggaggcccccaggacccgcacacacgcacctacagg
ccctgctactccaccatatccagccggagtgactttgtatttatgaagcaacccatgctg
agtcacaacaacacactcaacatgacactcagcaggaagcaccttatgaactcagtcagt
gagcaaaagccccccaacaatgactggcgcttcacacagggacagagacctggaccaagc
ggtccccacatgccgtacggtacacacataagatggacgccgaagagtgggacaagggca
actggaggacctgaggttgccatgggaactggcccttggccacagcccccaactgaggct
gagcagctccaagccctgatggctgcagcaaacgaagtgagcgaggctacagccaccctg
ggacccggcaccatgggcctgagtacccgctacagcccccagttcaccctgcagcacgtg
cccgactatcgccagaatgtctacatccccggcagcacggccacactcacctccaacccc
cagcagcagcaggccacggctcagcaagccacccagcaggcactgcccccgccccagacc
tcagctcagcctgagcctcccaaggccgcccagacccctgcctccaagaagaagtccacc
aagaaggagaagaagtag
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