Larimichthys crocea (large yellow croaker): 104930986
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Entry
104930986 CDS
T04659
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03440
Homologous recombination
lco03460
Fanconi anemia pathway
lco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104930986 (brca1)
09124 Replication and repair
03440 Homologous recombination
104930986 (brca1)
03460 Fanconi anemia pathway
104930986 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104930986 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104930986 (brca1)
03036 Chromosome and associated proteins [BR:
lco03036
]
104930986 (brca1)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104930986 (brca1)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104930986 (brca1)
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104930986 (brca1)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104930986 (brca1)
Multi subunit type E3
BRCC complex
104930986 (brca1)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104930986 (brca1)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104930986 (brca1)
BRCA1-A complex
104930986 (brca1)
BRCA1-B complex
104930986 (brca1)
BRCA1-C complex
104930986 (brca1)
BRCA complex
104930986 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
104930986 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
RTT107_BRCT_5
zf-Nse
zf-RING_5
zf-MIZ
zf-RING_10
zf-ANAPC11
zf-RING_4
PTCB-BRCT
zf-PARP
TRAF3_RING
zf-rbx1
Sina_RING
Motif
Other DBs
NCBI-GeneID:
104930986
NCBI-ProteinID:
XP_019120243
LinkDB
All DBs
Position
XVI:complement(18192477..18217090)
Genome browser
AA seq
1417 aa
AA seq
DB search
MTTPKAKDVKKGISALWETLQCPICLDLMTTPVSTKCDHQFCKFCMMKLLDNAKQNRANC
PVCKAKITKRSLQESPGFQTLVAGLQDMIQAYERDTGTNYFTGMCQQKGESGVTDAETTK
QRDDMLSGDTPGSVHDHKENGNSDDLPKSHSSTVAAQKGFARLMGLEDTSPLTTENEGLD
SGLGEAPPTSDKKMHSPTHNLESLETEISEVVEKATSTFKTRGQMRFAKLEKASLHPPLV
LDETEHQPLRKSSRKKQKRDPEPDKILDQKRKKSLEKVAEWLMKVPTEESLELEKPNEDS
DDSDSCSSTSTIDIKKINSDVNQRREGHAKALEEQVFGAVYKRDRRRTRTVSSPPNVFVK
PPKTNKTTPETVDAADFVMKTSSEDKSESDMEEKQQMIEDIQDTCSDIFKESKQAMEEND
INKYGEELNSLLESEKYNSKDEVPCPVSEICQQQPERKSKKRRCNTLQQVDSDLLDQAKA
KPESAEQKKTDKRKGRNIRSEKGKPARVPNPLVLVGVQNGETSPETRPRSEVQVHIEHYA
SSEDQEIPVTRSTRRSKRLQVFAEEVKEEPKKANVKGKIPEKDSNVAKQSEDAKGGTSDK
KGNMKKVAERNGCVYDEDLGGIEDMESDERASYLRRTEDAEESIAEVPNAEALSEATAAC
YVPVVPNSTSPAEASVVDPTLECPTVQFPNSVQLETETKRAGIENEEDKNDSEVDTEQLL
RSFKATKRKSFHLGGPNVKRSRSSDQENGEADKNQCVRPSVESAKDQINTKISEITNQEA
FRDNEDSSCSNLIPPSNSPGLRRKAAEKPDQVVVEASNPDSCSDEDNSVVSRNSASSPLP
PNKVSTREIESPPLSVVPHVVNSGLCLTVAEPEELNEPTENQLDCSMKEEMRENISGCSS
SGKHSVSAAGHISNAESSLTPDGVKEVIPDTKSGELSVHSSIQSMPQKRKRTRAQRLESS
SDSSDCTGEELPPLTEIFRTSAPPSAATEDQGHAGETNRCEGVTAGGAERVSRPSACPSP
DCVHSSQASVDLFGTPDECEVPVNDPTVESSQFSSEVLVTQQKVEMQKELLRLEKLMALV
TEVLQEKEDSPAKEVISKTNQSSKLTGPDAHRPLECDEDISQGSDQKIVPEAEREPSEDK
VVAQHSASKHSSTAEPAAQHSTHTAPSVKTTGASVTLSSTSAAKTLKSNGLRSDGQEDKE
NDTPVRDRSKAKVVLVSSGLGPSEQIMVKKFAKQVGGRVVSQVTAEVTHIIMHTDEQLVC
ERTLKYFLGIAGRKWVVSFQWISECFRQKKVLDESPFEVRGDVVNGPNHQGPMRARNTED
NNLLMKGYKICFQGPFTDMTTDQMEWMVELCGASVVKDPLLLNGKQKSHQLVIVQPGPES
SPSTYSSLSRQATVVTRGWLLDTVATYTIQNLIKFTT
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccccaaaggccaaagatgttaaaaaggggatttcagccctttgggagactctg
cagtgtcccatatgcttggatttaatgactacacctgtatccacgaagtgtgaccatcaa
ttttgcaaattttgtatgatgaaacttttggacaacgccaaacaaaacagggcaaactgc
ccagtgtgtaaagccaagataaccaaaaggagcttacaggagagccctgggtttcagaca
cttgtcgcaggattgcaggatatgatacaggcatatgaacgcgacactgggacaaactac
tttactggaatgtgccaacagaaaggagaatcaggagtcacagatgctgaaactacaaaa
cagcgtgatgatatgttatctggagatacacctggcagtgtccatgaccacaaggaaaat
ggtaacagtgatgatcttccaaagtctcactcctcaaccgtagcagcccagaaaggattt
gcaagacttatgggccttgaagacacaagtcctttgacgacagaaaatgaaggcctggac
agtggccttggagaagcgccgccgacttctgataaaaaaatgcacagccctacacataat
ttggaatcattggaaacagaaatttcagaagttgtggaaaaggcaacatcaacattcaaa
actcgaggccaaatgaggtttgccaaattggagaaagcctctcttcatccacctttagtt
ctggacgagaccgaacaccaacctttaagaaagtcctcaaggaagaagcagaaaagggat
ccggagcctgacaagattcttgatcagaaacggaagaaaagtttagagaaagttgctgag
tggctcatgaaagttccaactgaagaaagtctcgagttggagaaacccaacgaagacagc
gatgactccgacagctgttcttctacttcaacaatagatatcaagaaaatcaatagtgat
gtgaatcaaagaagggagggtcatgctaaagctcttgaagagcaggtgttcggagccgtc
tacaaaagagatcgaagaaggaccaggactgtttcttctccgcctaatgtttttgtcaaa
ccaccgaaaactaacaaaacgacaccagaaacagttgatgctgctgattttgtcatgaaa
actagttctgaagataaaagtgaaagcgatatggaggaaaagcaacaaatgatcgaagac
atacaggacacctgcagtgacatttttaaagaatcaaaacaggcaatggaggaaaatgat
atcaacaaatatggagaagagttgaacagtttgctagagagtgaaaaatacaatagcaaa
gatgaggttccctgtcctgtgtcagagatttgccaacagcaaccagaaaggaagtcaaag
aaaaggaggtgtaacactctgcagcaggttgacagtgatttactagatcaagctaaggca
aagccagaaagtgcagagcaaaagaaaactgacaagaggaaaggtagaaacataaggtcg
gaaaagggcaagcctgctagagtgccgaacccccttgttttggttggagttcaaaatgga
gaaaccagtcctgagaccagaccaaggtcagaagttcaagttcatattgagcattacgcc
agcagtgaggaccaagaaatccctgtcacgaggagcacaaggaggagtaaaagacttcaa
gtcttcgcggaggaagtcaaggaagagccaaaaaaagcaaacgtcaaaggcaagatacct
gagaaagacagcaatgttgcaaagcaatctgaggatgctaaaggtggaacgtcggataag
aaaggaaacatgaagaaggtggctgaaagaaacgggtgtgtttatgacgaagatttaggt
gggatagaagacatggagtctgatgagagagcgtcttatttgagacgaacagaagatgct
gaagagtctattgctgaagtgccaaatgctgaagctttgtctgaagctactgctgcttgt
tatgtccctgtggtgccaaactctacaagtccagctgaagcatctgtggtagatccaaca
cttgaatgtccaacagttcaattcccaaacagtgttcagttggaaactgagactaaacgt
gctggaatagaaaacgaggaggataagaacgacagtgaggtggacacagaacaactgctc
aggagcttcaaagccaccaaaaggaaatctttccatctcggtggtccaaatgtgaaaagg
agccgtagttcagaccaagaaaacggtgaagccgataagaaccagtgtgttcgacccagt
gttgaatctgcgaaagatcagataaacacaaagatatccgaaatcaccaaccaagaggca
ttcagagacaatgaagactcatcttgtagcaatttgatcccaccttctaactcacccggc
ctgagaagaaaagctgcggagaaaccagatcaagtggtggtagaagcctccaaccctgat
agttgttcagatgaggacaactctgttgtctccaggaatagcgctagtagtccccttcct
cctaataaagtgtcaacacgtgaaatagaaagtcctcctctttctgttgtgcctcatgta
gtaaattctgggctctgcctcacagtcgctgagcccgaggagttaaatgaacccacagag
aaccagcttgattgttccatgaaggaggagatgagagagaacatctcagggtgcagttcc
agtgggaaacattcagtcagcgcagctggacatatttcaaacgcagagtcatctttaact
cctgatggagttaaagaggttatccctgacacaaagtcaggagagctcagcgtccattcg
tccatccagagcatgccacagaagaggaagaggacgagggctcagaggctcgagtcgtca
tccgattcgtcagattgcactggagaggaattaccgcctttgaccgagattttccgcacg
tcagcgcctccctctgctgcgaccgaggatcagggacatgccggtgaaacaaacagatgt
gaaggtgtcacagctggtggagcagaacgtgtgagccgcccatctgcttgccccagccct
gactgtgttcattccagccaagcatctgtggacttgtttggcacgccagatgaatgtgaa
gtcccagtaaatgaccccactgtggagtcatcacaattttcaagcgaagtccttgttaca
cagcaaaaggtagaaatgcagaaggagctgttgaggttggagaagttgatggctctggtg
acggaggtgcttcaggagaaagaagacagccccgctaaagaagtcatctcaaaaaccaac
cagagcagcaaactcacaggcccagacgctcacaggcccctagagtgtgacgaggacata
agccaaggttcagaccagaaaattgttccagaagcagaacgagagccgtctgaggacaaa
gtggtcgcccagcacagtgcgtcaaagcacagcagcactgcagagccagcagcgcagcac
tccacacacacggcgccgagtgtaaaaaccaccggagcctccgtgacacttagttcaacc
tcagcagccaaaacattaaagagcaacggtttgcgatcagatgggcaagaagacaaagaa
aatgacactcctgtgagagatcgaagtaaagccaaggtggtgctagtgtcatctggatta
ggccccagtgaacagataatggtgaaaaagtttgccaagcaagtcggaggccgtgtggtc
tcccaggtaacagcggaggtgacccatatcataatgcacacagacgaacaactggtgtgc
gagcgtacgctgaagtacttcctcggcatcgcaggcaggaagtgggtggtgagcttccag
tggatctcagagtgcttcagacaaaagaaagtcttagacgagagtcctttcgaagtgaga
ggtgacgtggtgaacgggccaaaccaccagggccccatgagagctcgtaacaccgaagac
aataacttgctcatgaagggctacaagatctgcttccaagggccttttacagacatgact
acagatcaaatggagtggatggtggagctctgcggagcatctgtagtcaaagacccactt
ctcctcaacggtaaacagaagtcccatcagctggtcatcgtacagcctggaccggagtcg
tcgccgtccacatatagcagtctctctagacaggcgacagtcgtcacacgcggttggctg
ttggacaccgtggcgacctacaccatccaaaacttgatcaagttcacaacatga
DBGET
integrated database retrieval system
