Larimichthys crocea (large yellow croaker): 104932223
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Entry
104932223 CDS
T04659
Name
(RefSeq) low-density lipoprotein receptor
KO
K12473
low-density lipoprotein receptor
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03272
Virion - Hepatitis viruses
lco04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
104932223
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
104932223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104932223
Membrane trafficking [BR:
lco04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
104932223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
cEGF
FXa_inhibition
EGF_CA
SGL
DUF5050
Vgb_lyase
hEGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
104932223
NCBI-ProteinID:
XP_010745698
LinkDB
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Position
XII:26239766..26251451
Genome browser
AA seq
904 aa
AA seq
DB search
MSVRLKIMIRSLFAFLLFLICCLDQTNALTTCGATQFSCGNGRCITARWVCDGTDDCGDG
TDELPGTCMSKTCRPTEFSCADRLNQCVPNSWRCDGKADCENGADEESCAPKQCTNTEFR
CSSGQCVSSSFVCDDEADCDDGSDEASCPPVTCTSTSFQCNNTVCVPRLWVCDGESDCTD
GSDEWPQNCGTKRPSTPAAHQCSSLEFRCGSGECIHGSWKCDGGDDCLDRSDEANCAHPT
CGPDEFQCGDGTCIHGSRQCNHHYDCRDRSDESGCVNVTHCEGPTRFKCRSGECISMERV
CDKKRDCRDWSDEPLRECGSNECVFGNGGCSHICNDLKIGYECLCPTGYRLVDKKRCEDI
DECADPDTCSQICINQIGSYKCQCQEGYQVDPATKACKATGTIAYLFFTNRHEVRKMTLD
KSEYTRVIPRLKNVVSLDMNMATNEIYWSDISQKKIYRAQMDSAEDSTQHSTVMDSDIDA
PEGIAFDWIHGNLYWTDSIRSTISVVTADGQRRKTLFHRDLTKPRAIVVDPHSNFIYWTD
WGNPAKIEKAGLNGGDRTALVTDNIVWPNGITLDQLNQRLYWVDSKLHTLSSIDVQGGGR
RTLIIDEDKLAHPLGLTVFEERVFWTDVSNNAILSANRLTGGDITPLAEHLASPEDIILY
HNLKQPAGRDWCQVSACEFMCLGAPQVGRHPPKYTCVCPDNMILARDMRTCVPAVPTPEA
PMEPQVPPTSPPRQPPAPASTTAKPQVHTTTVPIRMASTAAKPVPRTTTIKPPVRTTTPE
IGTTTPQKVRPKFTQTTTAAPVTTPDTRHGFAVVPNTASTTPVALYIVLPLAIICLVAVG
AVLLWRSYRLKNTNTIHFDNPVYQKTTEDQVHIWRSNSPDGYSYPKRQVVSLDEEADNPA
FTEN
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcggctaaaaatcatgatccggtcgctttttgcgtttttgttgtttctcatc
tgctgccttgatcagacaaatgcattgacaacatgtggagccacgcagttctcgtgtgga
aatgggagatgtatcacagccagatgggtgtgcgacggcacagatgactgcggagacggc
acagacgaacttcccggtacctgcatgtcaaaaacgtgtagaccgacagagttcagctgc
gccgaccgccttaaccaatgtgtgccgaacagttggcgctgtgatgggaaagctgactgt
gagaatggagctgatgaagagagttgtgcgccaaagcagtgcacaaacacagagtttcgc
tgcagcagcggccagtgcgtgtcgtcctccttcgtgtgtgacgacgaggcggactgtgac
gacggcagcgacgaggcctcctgcccgcctgtcacttgcacctcgacgtccttccagtgc
aacaacaccgtttgtgtcccgcgcctgtgggtctgcgacggtgaaagcgactgcaccgac
ggctcggatgagtggccccagaactgcggtacaaagagacccagcactcctgctgcccac
cagtgctcatccctggagttcagatgcggcagcggagagtgcatccacggcagctggaag
tgtgacggcggagacgactgcctcgatcgatcagacgaggctaactgtgctcatcccacc
tgtggtcctgatgagtttcaatgtggtgatggcacttgcatccatggtagccgccagtgc
aaccaccactacgactgcagggacaggagtgatgaatccggttgcgtcaatgtgacccac
tgtgaaggtccaaccaggtttaagtgtcgcagtggggaatgtataagcatggaaagggtt
tgtgacaagaagcgtgactgcagggattggtcagatgaacctcttcgggaatgtggctcc
aatgaatgcgtgttcggcaacggtggttgctctcacatctgcaatgacctgaagatcggc
tatgagtgcctatgtcccactggatatcgcctggttgacaaaaaacgctgtgaagatatc
gatgagtgtgccgacccggacacctgcagccaaatctgcatcaaccagatcggcagctac
aaatgccagtgccaggagggttaccaagttgacccagcaaccaaagcctgcaaggccacc
ggtacaatagcctaccttttcttcaccaatcgtcatgaagtaagaaagatgactttggac
aaaagcgagtacaccagagtgatcccccgtctaaagaacgttgtgtctctcgacatgaac
atggccaccaacgagatctactggtcggacatctcccaaaagaagatttacagagctcag
atggactcggccgaagactccactcagcacagcactgtcatggatagcgacattgacgcc
cctgaaggcattgcttttgactggatccatggcaacttgtattggactgacagcattcgc
agcaccatctctgtggtaaccgctgatggtcagcgtcgcaagactctcttccaccgagac
ttaacgaaaccccgtgctatcgtggtcgacccccacagcaacttcatttactggacggac
tgggggaatccagctaagatcgagaaggcaggtctcaacggaggggatcgcactgctctg
gtcacggacaacattgtgtggcctaacgggattacacttgaccagctgaaccagcggctc
tactgggtggactctaagctgcacaccctctccagtatcgatgtgcagggcggtggtcga
cgcaccctcatcattgatgaagacaagctggctcacccactgggactcactgtgtttgag
gaaagagttttctggacggacgtcagtaataacgccatcctcagtgcaaacaggctgaca
ggtggtgacattacaccattggcagagcacctggcatccccggaagacattattctctac
cataacctcaaacaaccggctggcagagattggtgtcaggtatccgcatgtgaattcatg
tgtttgggagctcctcaagtgggaagacatccgcccaaatacacatgtgtctgtccagat
aacatgatactagccagggatatgaggacatgtgtacctgctgtgccaacacctgaagca
cccatggagcctcaagttccacctactagccctcctcgtcagccaccagcgccagccagc
accacagccaagccccaggttcacaccacgacagtgcccatccgaatggcaagcactgca
gccaagccagtgccacgcaccaccaccattaagcctccagtaaggacgaccacacctgaa
attgggactacgacaccgcagaaagtgaggcctaaatttacccagaccaccacagcggct
ccagtcactactccagatacccgacatggatttgcagttgtacccaacactgcctccacc
accccagtcgctctgtatattgttttacctcttgccatcatttgtctggtggctgttggt
gccgtgctgctatggaggagctacaggttgaagaacaccaacacgattcactttgacaac
ccggtctatcagaaaactactgaggaccaagtgcacatttggaggagcaacagccccgac
ggttactcctacccaaagagacaagttgtgagcttggatgaagaggcggacaatccagcc
ttcacggaaaactga
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