Larimichthys crocea (large yellow croaker): 104934764
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Entry
104934764 CDS
T04659
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04115
p53 signaling pathway
lco04145
Phagosome
lco04148
Efferocytosis
lco04350
TGF-beta signaling pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
104934764
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104934764
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
104934764
04148 Efferocytosis
104934764
09143 Cell growth and death
04115 p53 signaling pathway
104934764
09144 Cellular community - eukaryotes
04510 Focal adhesion
104934764
09142 Cell motility
04820 Cytoskeleton in muscle cells
104934764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104934764
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104934764
Membrane trafficking [BR:
lco04131
]
Endocytosis
Phagocytosis
Opsonins
104934764
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104934764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
TSP1_CFP_C
cEGF
EGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
104934764
NCBI-ProteinID:
XP_019128729
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All DBs
Position
XXIV:complement(12982261..12991038)
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AA seq
1169 aa
AA seq
DB search
MMLCGIFLLLMLWTCEGARLAEARDDNSVYDLFDLARVSKRHNGVSLVKGVDPYSPAYKV
LNADLIPPVPDSSFRDLLDSIQAERGFILLVNLKQIKKSRGSILTIEKNDQSGPIFEIIS
NGRANTLDVVYSTLNQQQVVSIEDADLATGHWKNITLFVQDDRVQLFVGCEEIDVSEMEL
PIHKVLSQEVADIARLRIGKGAVRDKFVGVLQNVHFVFGTTLDAILRNKGCQSGAALTDV
MTLDNPVNNSSPAIRTDYNGHKAKDLQSVCGFSCEDIASMFKELKGLGVVVKQLSNDLRK
VSEESTVLKNKMNIQHGICIHNGIVYKDKDEWTVDGCTECTCQNSATVCRKISCPLVPCA
NATVPDGECCPRCPSYKEDGWSPWSEWTPCSTTCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGEGRQT
EICRNSPCPIDGGWGPWSPWDTCTVTCGGGIQNRKRLCSDPAPKYGGKDCIGDGTMTQLC
NNQSCPVDGCLSSPCFPGARCISFPDGSFKCGKCPLGYTGNGIKCKDVNECKAVPDACHT
HNGIHRCENTEPGYNCLPCPTRFSGPQPFGRGVEQATAKKQVCKPRNPCQDGSHDCHKNA
NCIYLGVYSESMFRCECKPGYAGNGHICGEDSDLDGWPNTDLLCVENATYHCKKDNCPVL
PNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDIGDRCDNCVFEA
NTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPLEHN
PDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDEKDNCRLAFNPDQVDSDGDGRGDVCKDDFDQDNVLDIYDVCPENFAISETDFRRFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDRDDD
YAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLIHRPKTGLIRVIMYEGKRIMADSGNIYDK
TYAGGRLGLYVFSQEMVYFSDLKYECKDT
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgtggcatctttttgctgttgatgctttggacttgtgaaggcgcaagactg
gcagaggctcgggatgataacagtgtgtatgacttatttgatctggcccgggtaagcaag
agacataacggagtgagtttggtcaaaggcgtagatccctacagccctgcatacaaggtc
ctgaatgcagacctgatccccccagtccccgacagctccttcagggacctcctcgactcc
atccaggctgagaggggcttcatcctgcttgtcaacctcaagcagatcaaaaaaagcagg
ggcagcattttgaccattgagaagaatgaccaatctggacccattttcgagatcatttcc
aacggaagggcaaacactctggatgtggtctactccactctgaaccagcagcaggtcgtg
tccatcgaggatgcagatttggctactggacactggaagaacatcacactgttcgttcag
gatgaccgggtgcagctttttgtcggctgtgaggagatcgatgtatcagagatggagttg
ccaattcataaagtgctgtcccaggaggtggcagacattgccagactcaggattggaaaa
ggagctgtgagggacaaatttgtgggagttcttcagaatgtacactttgtctttgggacc
actcttgatgccatactgagaaataagggatgccagagtggagctgccttaactgatgtc
atgaccctggacaacccagtcaataactccagccctgccattaggactgattacaatggc
cacaaagccaaggatctgcagtctgtctgcggcttctcgtgtgaggatatcgccagcatg
tttaaggagctcaagggactcggtgtggttgttaaacagctgtcaaatgatctccgcaaa
gtgtctgaggagagcactgtgctgaaaaataaaatgaacattcagcatggaatttgcatc
cacaacggcattgtgtacaaggacaaagatgaatggaccgtggatggctgcaccgagtgc
acctgccagaactctgctaccgtgtgtcgcaaaatctcctgccctctggtgccctgtgct
aacgccaccgtgcccgatggagagtgctgccctcgttgcccgtcctataaagaggatggt
tggtccccctggtctgaatggaccccttgttcgacaacttgtggtcgtggcatccagcag
cgcggacgctcctgcgaccgcatcaacaacaactgtgagggcacctctgttcagacccgt
gactgctacccccaggaatgtgacaaacgcttcaaacaggatggtggttggagccactgg
tctccctggtcttcttgctctgtgacctgtggtgagggagtcatcacccggatacgcctt
tgcaactctcccacaccccagatgggtggaagggactgccagggagaaggacgtcaaact
gaaatctgcagaaattccccttgtcctattgatggaggttggggaccttggtcaccatgg
gacacctgcactgttacctgtggtggaggaatccagaaccgcaaacgtctctgctctgat
cctgcccccaaatacggaggaaaggattgtattggtgatggcactatgactcaactgtgc
aacaatcagagctgccctgttgatggttgtctctccagcccatgcttccctggagcaaga
tgcatcagtttccctgatggctctttcaagtgtggcaagtgtcctcttggctacactgga
aatggcatcaaatgtaaagacgtcaacgagtgtaaagctgttcctgatgcttgccataca
cataacggaatccatcgctgtgagaacaccgaacccggttacaactgtctgccctgccca
acacgtttctctggccctcagccatttggaagaggagtggaacaagcaactgctaaaaaa
caggtttgcaaaccccgcaacccttgccaggatggtagccatgactgccataaaaatgca
aactgcatctacttgggcgtctactctgagtccatgttccgctgtgagtgcaagccagga
tatgctgggaatggtcatatttgcggagaggacagtgatctggatggatggcccaacact
gacctgctgtgtgtggagaacgccacctaccactgcaagaaggataactgccccgtcctt
cccaactctggacaggaagatcatgacaaagatggcctgggtgatgaatgtgaccatgat
gatgacaatgatgggatccccgatgatagggacaactgcccaagagtgtacaaccctgcc
cagtatgacgcagacagagatgatattggcgaccgctgtgacaactgtgtgttcgaggct
aacactgaccaaactgatactgacaacaatggagagggtgatgcctgtgctgttgacatt
gatggtgatggcattctgaatgagaatgacaattgcccatatgtttacaacgtggaccag
agagatactgacagggatggtgtgggagaccattgtgacaactgtcctttggagcataac
cctgatcagattgactctgactcagatcgcgtaggagacaagtgcgacaacaaccaggac
attgacgaagatggtcaccagaacaatttggacaactgcccctacatacccaacgccaac
caggcagaccacgacaaggatggcaagggtgatgcctgtgaccatgatgatgacaatgac
ggcattcctgatgagaaagacaactgtaggctggccttcaaccctgatcaggtcgactct
gatggtgatggccgtggtgatgtgtgcaaagatgattttgaccaagacaatgttctggac
atctatgacgtgtgcccagagaactttgccatcagtgaaacagacttccgcagattccaa
atggttcctctggaccccaagggcacatcccagattgaccccaactgggtggtccggcat
cagggcaaggagttggtgcagactgtcaactgtgaccctggcattgctgttggttatgat
gagttcagtgcagtggatttcagtggaacattcttcatcaacacggacagagatgacgac
tatgctggctttgtgtttggctaccagtccagctcacgcttctacacagtgatgtggaaa
cagatcacacaaacctactggtcccacacacccacaagagctcaaggctactctggcctg
tcaatcaaagtggtcaactccaccacagggcctggtgagcatctgaggaacgccctgtgg
cacaccggagacacagcaggacaggtgcgcactctgtggcacgaccccaagaacattggc
tggaaggacttcactgcctacagatggcatctgatccacagacccaagactggacttatt
agagtaatcatgtatgaaggcaagagaatcatggccgattctggaaacatctacgacaag
acatacgctggtgggcgactaggcttgtacgtcttctctcaggagatggtttacttctca
gacctcaaatatgaatgcaaagatacataa
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