KEGG   Larimichthys crocea (large yellow croaker): 104936293
Entry
104936293         CDS       T04659                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    104936293
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lco03000]
    104936293
   04121 Ubiquitin system [BR:lco04121]
    104936293
   03036 Chromosome and associated proteins [BR:lco03036]
    104936293
Enzymes [BR:lco01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     104936293
Transcription factors [BR:lco03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    104936293
Ubiquitin system [BR:lco04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     104936293
Chromosome and associated proteins [BR:lco03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    104936293
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     104936293
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box PHD
Other DBs
NCBI-GeneID: 104936293
NCBI-ProteinID: XP_027133708
LinkDB
Position
III:complement(2034238..2048845)
AA seq 793 aa
MALSLSGDDEEYDSESEQQQRAANRPKQPQQQQQQPQPKMGTSSAAVKLPSNRSSSGARR
RRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEA
GKEDTLEEEEDKFNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKS
GKVLKQKRGPGFKYASNLPGSLLREQKPVKEEGDVVSSAAKRRPDREETPRYRPDEALHR
QPPLLSPCNLPRPRPEDKLRKKRKLFDDDEDEDLGVRKKEKSDDPYFSKLLHQIKTEEDD
EDAYEEENEEGREPHFRGGVERKGRLGDAEEEGDDKDSRNELLNPFIKTPVGDSDQSHCS
SPQAGPSSEGGSETQEKGQRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQP
LKVEPETENEEPKKLFRNGSELGDQRPHLKTKEMNGTPWELRHFYPSPITPLGFNRSTPT
NRPAPPHSPPKCVQMERHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFGYLTHQELC
VCMRVCKTWNRWCCDKRLWTKIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSW
LINRLPGLRVLKLSGCSWAAVSALCTSSCPLLRSLDVQWVEGLKDAQMRDLLSPPTDNRP
GQLDNRCKLRNVEDLRLAGLDITDTSLRLISRQMPLLSNLDLSYCNHINDQSVNLLTAAG
TTTRDSLTEINLSVCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKTACERFIAEMSVSVP
FRLKEDKLLQKSS
NT seq 2382 nt   +upstreamnt  +downstreamnt
atggcgctgtcactgagcggagacgacgaggagtatgattcagagagcgagcagcagcag
cgagcggccaaccggccgaagcagccgcagcagcagcagcagcagccgcagcccaagatg
gggacgtcctcggcggcggttaagctgccgtccaaccgcagctcgtccggtgcccgacgc
cggaggacgcgctgccggaagtgtgaagcgtgcctccggaccgagtgtggagagtgtcac
ttctgcaaggacatgaagaagttcggggggccggggcgcatgaagcagtcgtgcatcatg
aggcagtgcatcgcgccggttctgcctcacacggcggtgtgcgtggtgtgcaaagaggcc
gggaaagaggacacgctggaggaagaggaggacaagttcaacttcatgctgatggagtgc
tccatctgcaacgagatcgtccaccccaactgcctgaaggtgagcgacgcctcgggagtc
gtgaacgatgaactccccaactgctgggaatgtcccaagtgcaaccacgctgggaagagt
gggaaagtattgaagcaaaaaaggggtccagggttcaagtatgcctccaacctccctggc
tctctgctgagggaacagaagcctgtgaaggaggagggggacgtggtctcctctgcagcc
aagaggaggccggacagagaggagacgcccaggtacaggccggacgaggctctgcatcga
cagccgccgctgctctccccgtgcaacctgccccggcccaggccggaggacaagctgagg
aagaagaggaagctgtttgatgacgatgaggacgaggatttaggtgtgaggaagaaggag
aagtcggatgatccttatttttccaaactcctgcaccagatcaagacagaagaggacgac
gaagacgcctacgaggaggagaatgaagaaggaagggagcctcacttccggggcggtgta
gagaggaaagggcgtcttggagacgccgaagaagaaggcgatgacaaggactccaggaac
gagctcctgaatcctttcatcaagacgcccgtcggagacagcgaccaatcccactgcagc
tccccgcaggccggacccagcagcgagggcggaagcgagacccaggagaaagggcagcgt
ccgaaagctcgccgcaaacggcgtttacccaacagggagctgagccgagagctgagcaaa
gcactgaaccaggagatccagaagacggaggactgcctcgccaacgagaaccgtcagccc
ctcaaggtggagccggagacggagaacgaggagcccaagaagctgttccgcaacggcagc
gagctcggagatcagaggccccacctgaagaccaaagagatgaacgggacgccgtgggag
ctgcgccacttctacccgagtccgatcactccgctcggcttcaacaggagcaccccgacc
aaccggccggcgcccccgcactcgccgcccaaatgtgtccaaatggagcggcacgtcatc
cggccccctccgataagcccgcctcccgacagactgccgctaaaagacggcaaaacacac
gtcatacagcgcgaggtgtggatgaagatcttcggctatctcacgcaccaggagctgtgc
gtgtgcatgagagtctgcaaaacgtggaacagatggtgttgcgacaagagactctggaca
aagatcgacctgaaccgctgcacctccatcaccccgctcatgctcagcgggattatccgc
cgacagccggtctccctcgacctcagctggaccaacatttccaagaaacaattaagctgg
ctcattaatagattaccaggtctgcgagtgttgaagttgtccgggtgttcttgggcggct
gtgtcggcgctctgcacctccagctgccctctgctgcgctcgctggacgtgcagtgggtg
gaggggctcaaagacgcacagatgagggacctcctctctcctcccacggacaacagacca
ggtcaactggacaaccgctgcaagctgcggaacgtggaggacctgcggctggcggggctc
gacatcacggacacgtctttacgtctcatcagtcgacagatgcctctgctgtccaacctg
gacctgagctactgcaaccacatcaacgaccagtcagtcaacctgctgacggcagccggg
accacgaccagggactcgctcacagaaatcaacctgtcagtttgtaaccgggtcacagac
cattccctaaacttcttcaagcgctgcggaagcatctgtcagatcgacctccgcttctgc
aagcaggtgaccaagacggcgtgcgaaaggttcatcgcggagatgtccgtgagcgtaccg
ttcagactgaaagaggacaaactgctacagaagtcgagctag

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