Larimichthys crocea (large yellow croaker): 104937673
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Entry
104937673 CDS
T04659
Symbol
kdm2a
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104937673 (kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104937673 (kdm2a)
04121 Ubiquitin system [BR:
lco04121
]
104937673 (kdm2a)
03036 Chromosome and associated proteins [BR:
lco03036
]
104937673 (kdm2a)
Enzymes [BR:
lco01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104937673 (kdm2a)
Transcription factors [BR:
lco03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104937673 (kdm2a)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104937673 (kdm2a)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104937673 (kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104937673 (kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
Cupin_8
LRR_6
C1_1
Cupin_1
LRR_8
Motif
Other DBs
NCBI-GeneID:
104937673
NCBI-ProteinID:
XP_027133471
LinkDB
All DBs
Position
I:complement(29793686..29807960)
Genome browser
AA seq
1311 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRTFDLDEKLKCIRFNSDLIKYMEGKDF
TFEYIQREGLRDPIVFERGDGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPSKFRYPFYYEMCWYVLERYLYCLTNVSHLTPEFQKYSLGIG
LTQADVETSEHPGNGTSNGVDSDTENEKIKLKEEEEEVKEEAAQVTAPQHVLTTFELEGL
CNLLGKLEELPAHKKCVPAGIRNATALLEDMRAVLKEHGSDNPKLSYTGEPIVKWPERPA
WYQPPTPPPPVIYRPRLGPTLHKPHSHKPTKRSSINALRRRRVRCKRCAACCRKECGTCH
YCHDMRKFGGPGRMKKSCIMRQCLAPALPNTARCAICGEGESDESNPSTHSLMECSVCSQ
IAHRQCIKEPGEGKINKDLPSCWECPKCYQGKDSASESSSDEDSEESEGSTSMPPSKLPA
YREGIGVGEGVRRGRRSRPPSRPTAPPPSQKLLLQHQQNRKRASALEQRLKKRIKLERSK
MLAKQSSLDRSPRMLSSRVLSRLRSPTSRLSQGRGRGSTWASGSPYRTSPSGTGSFQQQQ
SSLGLVLELKGEPRRGRGRGVRLRGGGAGRGIRSGRSHEEMEEEEEEEEESEDSSSSSTN
SSSSNDDEEEERGQNSGRGLDKENQPQSRRGGRAAKEREEEGSEVANQNGAEEDDEEEME
QDSQTGGKEGSYLKVTLQKPTRAKRDPSAIVPKLEAVAPQTATSTIHNQTRSLVRPPIRN
RGPGPDQHSNRHTPPHTRSGHTDTRTSHPERPEASKRTKPSRPGKLSNGASCSSSSELPH
LRIPLSALQEGGSEADRENGGSGPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDK
RLWSRIDLSIKRTITPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGHLPGLKDLMLAGC
SWSSISALCSSTCPLLRSLDLRYADGVKDSQIREIVTPPGCDNRSQLRTMQCLRLAGLDI
SDSTLRLVIRHMPHLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLTELNLGGCSKLTDTC
LKYLRRLSCISLLDLRGCNGVSRKACEAFISELSVNTLYCLSDEKLIQRIS
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccctcacacacggtacagcaaacgcctgcgtacaggtacgcggcggcgctac
caggacgatggaatctcggatgatgaaatcgaagggaagcgaacgttcgacctggatgaa
aagttgaagtgcatcaggtttaactctgacttgatcaaatacatggagggcaaagatttc
acatttgaatacatccagagagaagggctcagagatcccattgtctttgagaggggagat
ggacttggcatacaaatgccagaccctgatttcagtgtgagtgatgtgaagttgtttgtt
ggtagccgacgcattgtagacgtgatggacgtgaacacccagaagggaatagagatgtca
atggctcagtggcgacgttactatgagacgccgccatcagagagagaaaaactctacaat
gtgatcagcctggagttcagccacaccaggctggagaatctggtcaaacggccagcttcg
gttgatcttattgactgggtggacaacatgtggcctcgccatctcaaggagagacagaga
gactccacaaatgccatcatagacatgcattatcccaaagttcagaagtactgtcttatg
agtgtacagggctgcttcacagatttccacattgactttggaggcacttcagtctggtac
cacatcctgcgaggaggaaaggtgttctggttgattccacccacaccgcagaacctggag
atgtatgagaactgggttttatcagggaaacagggagacatcttcttgggggacaagtgt
catgactgtcagaggatagagctcaagcagggcaacaccttcataatcccatcagggtgg
atccacgctgtgtacaccccagaggacacgttggtgtttggggggaatttcctccacagc
tttaacatccccatgcagctcaacatctacagcattgaggatcgcacacgggtgccatca
aagttccgctatccattttattatgagatgtgctggtatgtcctggagaggtacctctac
tgtctgaccaatgtctcccacctcactcctgagttccaaaaatactccctaggaataggg
ctgacccaggctgatgttgaaaccagcgaacacccagggaatggcacctctaatggagtt
gacagtgacactgaaaacgagaagatcaagttaaaggaagaagaagaagaagtcaaagag
gaggcagctcaggttaccgcacctcagcatgtgctgactacctttgagctggagggactg
tgtaacctcttagggaagctggaggagctgccggcccacaaaaagtgtgtccctgcaggc
atcaggaatgccacagccctgcttgaagacatgagggccgttctgaaggagcatggcagt
gataaccccaagctctcctacactggagagcccatcgtcaagtggcctgaaaggccagca
tggtaccagccccctactccccctcctcctgtcatttaccgtcctcgcttgggccccacc
ctccacaagcctcacagtcacaagcccaccaaacgctcctccatcaacgccctgaggcgc
aggcgggtgaggtgcaagcgctgtgcagcctgctgcaggaaggagtgcggcacatgccac
tactgccatgacatgaggaagtttggtgggcctggacgcatgaagaagagctgcattatg
aggcagtgtctagcgcctgccttgccgaacacagcgcgttgtgccatatgtggagaagga
gaatcagatgaatcaaatccgagcactcactcgctcatggagtgctccgtctgctcgcag
attgcccatcgtcagtgcattaaggaacctggtgaggggaagatcaataaggatttgccg
agctgctgggaatgccccaaatgttaccaaggcaaagactcagcatcagagtcttccagc
gatgaagacagtgaagagtcagagggctcaacatccatgccaccgtccaaacttccagca
taccgggaaggcatcggtgtaggtgaaggggtgagacgagggagacgtagcagaccccca
tcccgacccactgcaccaccaccttctcagaaactgctactacagcatcaacagaaccgc
aaaagagcaagtgcactggagcaaagacttaagaagaggataaaactggagcgcagcaaa
atgttagcgaaacagtcgtctctagatcgttctcccaggatgctgagctccagggtgctg
tcccggctacgctctccaaccagcagactatctcagggcagaggtcggggctccacctgg
gccagtggctcaccttaccgcacctctccctcagggaccgggtccttccaacagcagcag
tcttccctcggtctggtacttgagctcaaaggagagccacgcagagggaggggaagaggg
gtgaggctgcggggaggaggagcaggaagaggaatcagaagcggtagaagccatgaagag
atggaggaggaggaggaggaggaggaggagagcgaggacagcagcagcagcagcaccaac
agcagcagcagcaacgacgatgaggaagaggagagggggcagaacagtgggaggggactg
gataaagagaaccagccacagtcgaggcgaggaggacgggcagccaaagaaagggaagag
gaagggagtgaggtggccaaccaaaatggagcggaggaagatgacgaggaggagatggag
caggacagtcaaacggggggcaaagagggctcatatcttaaagtgacactccaaaaacca
accagggccaagcgggacccatcagcaattgtcccaaaattagaggctgtcgctcctcaa
actgccacttccacaatacacaaccaaaccagatccctcgtcagaccacccattagaaat
cgtggccctggtcctgatcagcactccaacaggcacacaccaccacacactcgcagcgga
cacacagacactcgtacctctcacccagagaggccagaggcctctaaaagaacgaagcca
agcaggccgggcaaactgagcaatggcgcctcctgttcttcatcttccgagcttccacat
ctccgtatccctctctccgccctgcaggaaggagggagcgaggcagacagggagaacggt
gggagcgggccgggctgtgagagggaggtgtgggtgtccgtcttccgctacttaagtcga
gcagatctctgcgtctgcatggctgtctgcaaaaactggtacaaatggtgcttagacaag
cggctttggtcacggatagacctgagcatcaaacgcaccattactcctcaggccctgaca
ggcatcataaagagacagccggtcacgctcgatctctcttggaccaacatctctaaaaag
cagctgaattggctcgttggccacctgcctgggctgaaggatctgatgctggcaggttgc
tcctggtcgtctatttcagctctctgctcgtctacgtgccctctcctccgttctctggac
ctgcggtatgcagacggggtcaaagactctcagatcagggaaatagtcactcctccaggc
tgtgacaatcgcagtcagttgcgaaccatgcagtgtttgcgactagcaggtctggacatc
agcgactccaccctgcgcctggtgatccgccacatgccccacttaacaaaactggacctc
tcccactgcaatagcctcactgaccactccatcaacctgctgaccgcagtgggctcgtct
acccgaaacacgctcacagaactcaacctgggaggctgcagtaaactgacagacacgtgt
ttaaagtatctccgccgcctctcctgcatctcactgctcgacctgcgcggctgcaacggc
gtctcccgcaaggcctgcgaagccttcatctccgagctgtcggttaacacgctctactgc
ctatcagatgaaaaactgatccagaggatatcctaa
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