Larimichthys crocea (large yellow croaker): 104938442
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Entry
104938442 CDS
T04659
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5 isoform X1
KO
K09446
interferon regulatory factor 5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
104938442 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104938442 (irf5)
Transcription factors [BR:
lco03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
104938442 (irf5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
104938442
NCBI-ProteinID:
XP_019126783
UniProt:
A0A7T3QVG6
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Position
XI:19800394..19806107
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AA seq
492 aa
AA seq
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MSVQPRRIRLKPWLLAQVNSGRYPGLQWLSADHRLFQIPWKHATRHTPMSDEENTIFKAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFQLKYDGTKETPVQPYKIYEVCEQPGNT
DAVDDEEEEMPNLMELTINPRISDPPSFSSFPAHSEVNQFSLSTDGAFGPPHVIPIPLLP
ERDVPMTPDLQARGPMVDQSFVRPVGLSNGLQDLNPLPPPAASAPPGPAPMEASSMGGVQ
NQEDPQNHQPCKYDLLSSVPLTDLDLKFQYRGRPMGSLTVSNPQGCRLYYGHLEPTPEQV
DLFGPVTLQQVLFPGTSEIQNQKQRFYTEALLDVMDRGLILEIWEQDIYAVRLCQCKVFW
SGPGMPEQGPPNPMEREKKIKVFSLNDFLQGLILFQKGEAQNPPPFEISFCFGEDWPDKK
PKEKKLIMVQVVPVVARILTEMFSGELSWSTDSIRLQISNPDVKDQTVEQFKELQRLLQS
QHIQGPWTPNIH
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtccagccccggagaatccgcctgaagccctggttgttggctcaggtgaacagt
ggcaggtatcctggtctacagtggctcagtgcagaccaccgactcttccagatcccctgg
aaacacgctacacgccacacgccaatgtcagatgaggagaacaccatcttcaaggcgtgg
gctctggagacaggtaagtatcaggaaggtgtggatgaacccgacccagccaagtggaaa
gcgaaccttcgctgtgctctgaacaaaagcagagagtttcagctgaaatacgacggcact
aaagagacgccagtccaaccgtacaagatctacgaggtgtgtgagcagcctggaaacaca
gatgctgttgatgatgaagaggaggagatgccgaatctgatggagctcacaatcaatcct
aggatcagtgaccccccttccttcagctcctttccagcccattctgaagtgaatcagttc
agtttgtctacagacggggcgtttggaccgccacacgtgatcccgatacctctcctccca
gaaagagatgtccccatgacccctgacctccaggctcggggtccgatggtggaccagagc
tttgtccgtcctgtaggactctctaacggactccaggacttgaatcctctgcccccccca
gctgcctcggctcccccagggccagccccaatggaagccagtagcatggggggcgtccag
aaccaggaggaccctcagaaccaccaaccctgcaagtacgacctactgagcagcgtccca
ctaacagatctggatctgaagttccagtaccgggggcggccaatgggctctttgactgtc
agtaaccctcagggctgccggttgtactatggacacctggagccgaccccggagcaggtg
gacctgtttggacctgtcaccctgcagcaggtcctgttcccggggacgtctgagatccaa
aaccagaagcagcggttctacacagaggccctgctggatgtgatggaccgtggtctgatc
ctggagatctgggagcaggacatttatgctgtccgcctctgtcagtgtaaggtgttctgg
tccggaccaggcatgcctgaacagggtcccccaaaccccatggagagggagaagaaaatc
aaagtgttcagcctgaatgacttcctacaaggactgatcctgttccagaagggggaagct
cagaacccgcccccctttgagatctccttctgttttggggaggactggcccgacaagaag
cccaaagagaagaaactcatcatggtccaggtggttcctgtagtggctcggatcctgaca
gagatgttctctggagaactcagttggtccacagacagcatccgcctgcagatctcaaac
cctgatgtgaaagaccagacggtggaacagttcaaggaactgcagaggctcctgcagagt
cagcacatccaggggccctggaccccaaacatacactaa
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