Larimichthys crocea (large yellow croaker): 104940290
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Entry
104940290 CDS
T04659
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04514
Cell adhesion molecules
lco04520
Adherens junction
lco04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
104940290
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
104940290
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
104940290
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104940290
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104940290
Enzymes [BR:
lco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
104940290
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
104940290
Cell adhesion molecules [BR:
lco04515
]
Immunoglobulin superfamily
Type II RPTP family
104940290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
fn3_2
I-set
Ig_3
Fn3_VIN3
Interfer-bind
PTP-SAK
Tc-R-P
DSPc
Ig_2
Y_phosphatase3
ig
PTPlike_phytase
PTP-NADK
Fn3_PTPRU
V-set
Fn3_ELFN
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
104940290
NCBI-ProteinID:
XP_027145784
LinkDB
All DBs
Position
XVII:complement(25161092..25452201)
Genome browser
AA seq
1925 aa
AA seq
DB search
MDLRFRRLSPLTRGALHLLLLARLVLPSHTESMPSFIKSPDDQTGISGGVASFVCQAVGE
PKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSVGEINTS
AKLTVLEEDQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIYWFKDFLPVDISS
SNGRIKQLRSGGTPIRGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRDQREVRR
VPPRFSIPPTNHEVMPGGSVNLTCVAVGAPMPYVKWMSGEVELTREEEMPIGRNVLELTN
IRQSANYTCVAISSLGMIETTAQITVKALPKQPTSLIVTETTATSVTLTWDSGNPEPVSY
YVIQYRAKLSDNGFQEVDGVATTRYSIGGLSPFSEYEFRVMAVNNVGRGPPSGIVDTRTS
EQAPSSPPLHVQARMLSSSTMLVQWEPPDEPNGQIRGYRVYYSSEHDAPLSAWQKHNTDD
SQLTTISGLTTDITYSLRVLGFTSVGDGPPSDVLQIKTQQGVPAQPSDFEAEAELDSRIM
LSWLWPVQDPIISFELLYWEANNPTDKHRVTFNPAGFYAVDGLKPDTLYMFSLAARSDMG
LGVFTQPIEARTAQSTPSAPPQEVRLLSLSSTSIKVSWVAPPTDSRHGEIVRYSLVYQAV
AGEDMERHQVSGIGADVTSYVLEDLEKWTEYLVWVRAHTDVGPGPESPAVHTRTKEDVPG
APPRKVEADALNSTALRVTWKPPLSVKQHGQIRGYQLVYSRLENGEPHGQPVIVDVSLPE
AQEAIITGLLPETTYSVTVAAYTTKGDGARSKAKVVTTTGAVPGKPTMMISTTIGNTALI
QWQPPKEMVGEHVGYQLQYKRAEEEAFIIKDFRQTDDHFTVTGLHKGATYIFKLCAKNRA
GNGEQYVKEISTPEDIPSSYPQNLSVVGLTTTSTKLSWDPPPLAERNGKIVKYVVVYRDI
NSLHNNTNSTAETEMTVQGLQPDTTYDIRVQAFTSKGGGPISPSIQSRTMSTSMPDLPSV
FTKNFGVKAVMKTSVLLTWDVPETYKSQVPLKILYNQQSVEVQGDLKRKLITQLQPDTEY
SFVLMSRGNSAGGLQQQVSIRTAPDLLKMKPVRYQHDVEEGGKVTISLPRVPAGAPVRCY
YIVVVPVTPASLRRWENPEDMDIHELLETDADSGQQRKRRQSQELLEPYIAAKLDTLPEI
FTLGDEKKYNNYYNKPLPGQQQYRCFVLADLMDQESQRTFAASPFSDPIVVKLHSGMTRQ
TEDPEMLWVMGPVLAVILIIIIVIAILLFKSKQERKRTSPAKDEHMAGVKDSLLAHSSDP
VEMRRLNYQTQGSSALSCPNTPRMREHPPIATCDLADHLERLKANDGLRFSQEYESIDPG
QQFTWEHSNLEVNKPKNRYANVIAYDHSRVILTPVDGVPGSDYINANYIDGYRKQNAYIA
TQGPLPETLSDFWRMVWEQRTCTIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLDT
VELATYSVRTFALYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLTFLRRVKACNPPDTG
PMVVHCSAGVGRTGCFIVIEAMLERMKHEKSVDIYGHVTCMRAQRNYMVQTEDQYIFIHE
ALLEAATCGNTEVPARNLYAHIQKLTQIPPGETVTSMELEFKKLANSKAHTSRFISANLP
CNKFKNRLVNIMPFESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYMATQGPLAETTED
FWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREF
KVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAG
VGRTGVFITLSIVLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCYWAALEYLGSF
DHYAT
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggaccttagattcagacggctttcgcctctcaccaggggagctcttcatctcctgctg
ctggccagactggtgctgccttctcacacagagagcatgcccagcttcatcaagtcccct
gacgatcagactgggatttcaggaggagtggcgtcgttcgtatgccaggcggtgggcgag
cccaaacctcgcatcacctggatgaagaaggggaagaaagtcagctctcagcgctttgag
gtgattgagtttgatgacggctcgggctccgtgctgcgtatccagcctttgaggacccac
cgcgacgaagccatttatgaatgcacagccaccaacagtgtgggagagatcaacaccagc
gccaagctcaccgttttagaagaggaccagatccctcatggtttccccaccatagatatg
gggccccagctgaaggttgtggagagaacgcgcactgctacaatgctgtgcgcggccagc
ggcaaccctgacccagagatctactggttcaaagacttcctacctgtggacatcagcagc
agcaacgggcgaataaaacagctacgttcaggtggtacaccaatccgaggagcgcttcag
attgagaacagcgaagagtcagaccagggcaagtacgagtgcgtggcagtcaacagcgct
gggactcgctactcggctccggctaacctttatgtacgagatcaacgggaagtgcgtcgc
gtgcctccccgtttctccatccctcccaccaatcacgaggtgatgcccggtggcagcgtc
aacctgacctgcgttgcggttggtgctcccatgccttatgtcaagtggatgagcggcgag
gtggagctgacccgggaggaggagatgccgattggacgtaacgtcctggagctcaccaac
atccggcagtctgccaactacacctgtgtggccatatcctccctgggcatgatcgagacc
acggcccagatcactgtcaaagccctacccaagcagcccacctccctcattgtgacagaa
accacagccaccagtgtcaccctgacctgggactctggcaacccagaaccggtctcctac
tatgttatccagtaccgtgccaaactgtctgataacggcttccaggaagtagacggagtg
gccacaacccgctacagcattggtggcctcagccccttctccgaatatgagtttcgcgtc
atggctgtgaacaatgtcggccgagggcctcccagcggtattgtggacactcgtacgagt
gagcaagcgccctcatcacctcctctccacgtccaggcgcgcatgctcagttccagcacc
atgctggtccagtgggaacctccagatgagcccaacggccaaatccgtggctacagagta
tactacagctcggagcacgacgccccgctcagcgcctggcagaaacacaacacagatgac
agccagctcaccaccatctcaggcctcaccacagatatcacctacagcctgagggtgctg
ggcttcacatctgtgggagatgggcctccctctgatgttctgcagatcaagacgcagcag
ggagttccagctcagccatctgattttgaggccgaggccgagctggactcacgcatcatg
ctgtcgtggctttggcctgtccaggaccccatcattagctttgaactgctctactgggag
gccaacaatcccacagacaagcatcgtgtcactttcaatccagcaggcttctatgcagtt
gatggtctaaagccagacacactttacatgttttccctggcagcaagatctgacatgggt
ttaggagtctttactcagcctattgaggccagaactgcccaatccaccccttcagcccct
ccccaggaggtacgcttgctcagcctcagctccaccagcatcaaggtgagttgggtggca
ccgcccacagacagccgccatggggaaattgtgcgctactctctagtctaccaagcagtc
gcaggggaggacatggagcgccaccaggtgtcagggattggtgctgatgtcaccagctac
gtgctggaggacctggagaagtggaccgagtatttggtctgggtgagggctcacactgac
gtcgggcctggccctgagagccctgcagtccacaccagaaccaaggaagatgtgcctgga
gctcctcccaggaaggtggaggcagatgccctcaactccactgccctcagggtgacctgg
aagcctcctctgtctgtgaagcagcatggccagatcagaggctaccagctggtctactcc
aggctagagaacggggagcctcacggccagccggtcatcgtggatgtttccctccctgaa
gctcaggaggccattataacaggtctgcttccagagactacctactccgtgactgtggct
gcgtataccaccaagggtgatggagctcgcagcaaggccaaggtggtcacgaccacagga
gcagtgcctggcaagcccactatgatgatcagtaccaccatagggaatactgccctgatc
cagtggcagccccctaaggagatggtgggggagcatgtgggataccagctgcaatacaag
agagcagaggaggaagctttcattatcaaagacttcagacagacagacgatcatttcaca
gtgaccggcctccacaaaggagccacctacatctttaaactgtgcgccaagaaccgtgca
ggcaacggggagcagtatgtgaaggagatcagcacccctgaagatattcccagcagctac
ccacagaatctgagcgttgtaggtctgaccaccacttccaccaagttgtcctgggacccc
cctcctctggccgagagaaacggcaagattgtcaagtacgtggtggtgtatcgagatatc
aatagcctgcacaacaacaccaacagcaccgcagaaacagagatgactgtccaaggtttg
cagcctgacacaacgtacgacatcagagtccaagcgttcaccagcaagggaggaggaccc
atcagccccagcattcagagcagaaccatgtccacctccatgccagaccttccctcagtg
ttcaccaagaactttggtgtgaaggctgtgatgaaaacttctgtcctgctgacctgggat
gtgccggaaacctacaaatctcaagtgcctctcaagatcctgtacaaccagcagagtgtg
gaggttcaaggcgatctgaagaggaagctgatcacacagctgcagccagatactgagtat
tcctttgtgctaatgagccgagggaacagtgctggtggcctccagcagcaagtttccatc
cgaacagctccggatctgctgaagatgaaaccagttcgctaccagcatgatgtggaggag
ggtggtaaagtgaccatcagtcttcccagggtccctgctggagcccctgtcagatgttac
tacatagtggttgtgcctgttaccccggcttctctgagaagatgggagaaccctgaagac
atggacatacatgagcttctggagactgatgctgacagtggtcaacagagaaagagaaga
cagagccaggaattgctggagccctatattgctgccaagctggacactctgcctgagatc
ttcactctgggtgatgagaagaaatacaacaactactacaacaaacccctccctggccag
cagcagtaccgctgctttgttctggctgacctgatggaccaagagtctcagaggacgttt
gcagccagtccgttctctgaccccatcgttgtgaagctccacagtgggatgacccgacaa
actgaggacccagagatgctgtgggtgatgggcccggtgctggctgtcattctcatcatc
atcatagtcatcgctatcctgctcttcaagagcaaacaagaaaggaaacgaacatctcct
gccaaggacgagcacatggcgggggtcaaggactcgctgctggcccactcctcagatcct
gtggagatgaggagactcaactatcagacacaaggttccagtgccctcagttgcccgaac
actccaaggatgagggaacacccacccattgctacctgtgacctggcagaccacttagag
aggctcaaggccaatgacggtctgcgcttctctcaggagtatgagtctattgatccagga
cagcagttcacttgggagcactccaacctggaggtcaataagccaaagaaccgctatgca
aatgttattgcctacgaccactccagggtcatcctcacacctgtggatggagttccaggt
agcgactacatcaatgccaactacattgatggctacaggaaacagaacgcttacatcgcc
acacaggggccgctgccggagacgctgagtgacttctggaggatggtgtgggagcagagg
acctgcaccatcgtgatgatgacccgcctagaggaaaagtcgcgggtgaagtgtgaccag
tattggcccagtcgaggcacagagacatatgggatgattcaggtgaccatgctggacact
gtggagctggctacatacagtgtgcgcacattcgccctctataagaatggctcaagtgag
aagagagaggttcgacagttccagtttatggcttggcctgaccacggagtgcctgagtat
cccaccccaactctgacctttctacgcagagtcaaggcttgtaatcctccggacactgga
cccatggtggtccactgcagtgccggtgtgggccggacaggctgcttcatcgtgattgaa
gccatgctggagaggatgaagcacgagaagtctgtggacatttatggtcacgtcacatgc
atgcgggctcagaggaactacatggtgcagacagaggatcagtacatattcatccacgag
gcactgctggaagctgcgacgtgtggcaacacagaagtccctgcccgaaacctgtacgcc
cacatccagaagctcacccagatccctcctggagagactgtcacctccatggaactggag
ttcaaaaaactggccaactctaaagcacatacctcaagattcatcagtgccaacctgccg
tgtaacaaattcaagaaccgtctggtgaacatcatgcctttcgagtccacccgtgtctgc
ctgcagccaatcagaggggtggagggctcagactacatcaacgccagcttcattgacgga
tacaggcagcagaaagcgtacatggccacccagggcccgttagccgaaaccacagaggac
ttctggaggatgttgtgggaacacaactccactattgtagtcatgctcaccaaactgcgc
gagatgggacgggaaaagtgccatcagtactggcctgccgagcgctctgcacgctaccag
tactttgttgtggaccccatggctgagtacaacatgcctcagtacatcctgagagagttc
aaagtcacagacgccagggacggccagtcgaggaccatcaggcagtttcagttcactgac
tggccagagcaaggagtgccaaaaactggagagggattcatcgacttcatcggccaagtc
cataaaacaaaggagcaatttggacaagacggaccaatcactgtgcactgcagtgctggt
gttgggcggactggtgtgttcatcaccctgagcatcgtcctggagaggatgaggtacgag
ggagtggtcgacctcttccagactgtcaagacgctccgaactcagaggccagccatggtg
cagacagaggaccagtaccaactgtgctactgggctgctctggagtacctgggaagcttt
gatcactatgcaacataa
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integrated database retrieval system
