Larimichthys crocea (large yellow croaker): 104940686
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Entry
104940686 CDS
T04659
Symbol
nod2
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 2 isoform X1
KO
K10165
nucleotide-binding oligomerization domain-containing protein 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
104940686 (nod2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lco04054
]
104940686 (nod2)
Pattern recognition receptors [BR:
lco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104940686 (nod2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
NOD2_WH
LRR_4
AAA_16
AAA_22
AAA_30
nSTAND3
AAA_29
Viral_helicase1
Sigma54_activat
T3RM_EcoP15I_C
NB-ARC
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
104940686
NCBI-ProteinID:
XP_010727419
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All DBs
Position
VIII:complement(22701099..22706489)
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AA seq
1019 aa
AA seq
DB search
MFAQEFVLKQRTEILHALCSSGSTEHLERVLDILLAQGELIWEDYQNIQVPDRALYTKAR
QLLDLVYTKGVDTCELFLAALKQVLPESQIVGLSFAGCNSNLEEKEEYQSTSTHTLLTQR
PSLVSKLLGRIHGALEALVISGHFTSADCDEVRLPVYTPSQQARRLLDHVRPKGELAAKV
VLQYIQQKQETGSALNPEKLTPPKEFLKYQKKLSSSVSAQSCFLSTYGGTSHMSLDDIYT
EGQLELAQYCADVHGPLGLEDIVGTVGTVNEEADTVLVSGEAGSGKTTLLQRLHLLWARG
VALQQFLLLFPFSCRRLNSEHRELSVKELLFQHCCWPDRDQEEIFQFILDHPHLVLFTFD
GLDELKQSFSDEKRLCCPTQPAPVHILLFNFIQGSLMKGVRKVVTSRPEAVGPMLKTHLC
KEVLLKGFSPSGIDCFVRKHHSDNTVATKVLESLQTNTALLGLCHSPVLCWIVSQCHKEL
LGCGEGSPQTITDVYLMILQHFFQHQSSLKSTVGLGWFQDHLKTVLHLGQLAFEGMKNTC
YIFSGTDLETCGVTENDIYMGFLIQSKDLSSNHGKHYEFLHVTMQCFFAALYIVLSNNMD
HSTISKLFEVKDMWETDLTSSCFRACLPSTYQQDCSLQGDATAAETSNLQITATFVSGLL
SKRHQSLWLQCCPSAVMEKKIRQVGKCLSKGMQKHFKSIPQPVEGEKKSMHAMPGFVWLI
KCIYEMQESRIAKDAMSKLEVDHLKLTYCNIGPVECTALAYVLQHLRNPVGLQLDNNSVG
DVGVEQLLPCMHICNSLYLRNNNITDEGIRKLIAKGIQCENFRKIALFNNKLTDACTQHI
SQLLRTKDDFLSLRLGNNNITAEGAKQLAEGLKFNHSLQYLGLWGNKIGDTGAEALAKAL
ESSKTLVWLSLVGNGVGNAGASALANIIKNSPTLEELWLTENCITRTGVERLIEALKHNI
HVKSIWYMMNTELYSRKYKSSPCLLLMWFVYVIGGCLHSRFGAMHGHTASFSAKKNCGC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcccaggagtttgtgctgaaacagaggacagagatcctgcatgcgctgtgcagc
agtgggtcaactgaacatctggaacgagttttggacatactgctggcccaaggggagctc
atatgggaggattaccagaacatacaggtaccagatagggcactgtacaccaaagcccga
cagttgctcgacctggtttatacaaagggtgtggacacttgtgagctctttcttgctgct
ctcaaacaggtcttgcctgaatcacagatagttggcctctcatttgctggatgtaattca
aatctagaagaaaaagaagaataccaaagcacatcaactcatactcttctgactcaaaga
ccaagcctggtcagcaagctactaggccgcattcatggtgctttagaagctctcgtcata
tcaggacactttacctcagcagactgcgatgaagtgcgcctacctgtatacaccccctct
cagcaggcaaggcgtttacttgaccatgtcagaccaaagggagaattagcagcaaaggtt
gtgctgcaatacattcagcaaaaacaggaaactggatccgctctgaacccggagaaactg
acccctcccaaagagttcttaaagtatcagaagaaactcagcagttctgtgtctgcccag
tcctgctttctcagtacttatggaggaaccagtcacatgtctctggatgacatctacacc
gaaggccaactggaactagctcaatactgtgctgatgtccatggacctttgggtctagag
gacatagtcggtacagtgggtacagtgaacgaggaggccgacacggtgctagtgtctggg
gaggcaggcagtgggaagactaccttactccaaaggttacacttgctttgggctcgggga
gtagccctgcagcaatttctacttctgtttccattcagctgtcgcaggttgaactcagag
cacagggaattgtctgtcaaagaattgctgtttcagcactgctgctggccagatagggat
caggaagagattttccagttcattctggaccatccacatctcgttctgttcacttttgat
ggcctggatgagctcaagcagagcttttcagatgaaaagaggctctgctgcccaacacag
cctgcacctgttcacatactattgttcaacttcattcagggttctttaatgaagggagtt
cgaaaggtggtaactagtcgcccagaggcagttggccctatgttaaagacacacctttgc
aaagaggtcctcctgaaaggcttttccccaagtgggattgactgttttgtaagaaaacat
cacagtgacaacactgtagctactaaggttttggagtccctacagacaaacactgcttta
cttggactgtgtcatagtccagtcctctgctggattgtctcacagtgccataaggagctg
ctaggttgtggagagggcagcccacagacaatcacagacgtgtacctaatgatcttacag
cactttttccagcaccaaagctccctgaagagtactgttgggttaggttggtttcaggat
cacctaaaaacagtcttgcatctggggcaacttgcctttgagggaatgaaaaacacctgt
tacatcttctcaggtacagacctggagacatgtggtgtaactgaaaatgatatctacatg
ggctttctcatacaaagcaaagatttgtcctccaaccacggtaaacactatgaattcctt
catgtgactatgcagtgtttctttgctgccctgtacattgttttgtcaaataacatggat
cattcaactatctctaagctctttgaggtgaaggacatgtgggagacagatctgaccagc
tcatgcttccgggcgtgcttgccttccacttaccaacaagattgctctttacagggggac
gctacagcagctgaaacatcaaatctgcaaatcacagcaacctttgtgtcaggactactg
tccaagcgccatcaaagtctgtggctccagtgctgccccagtgctgtgatggagaagaag
atcagacaggtagggaaatgcctgtccaaaggcatgcagaaacacttcaagtctatccct
caaccagtagaaggagagaagaagagcatgcatgcaatgcctggctttgtctggcttatc
aaatgcatctatgagatgcaggagagcaggattgctaaagatgccatgagtaagctggag
gtcgaccatctgaaactgacctactgtaacatcggtcctgtagagtgtactgcactagcc
tatgtgctccagcatttaaggaatcctgtaggactccagctggacaacaactctgtaggt
gatgttggagtggagcagcttcttccctgcatgcacatttgtaattccctgtacctaagg
aataataacattacagatgaggggatccgcaaactgattgctaaaggtatccagtgtgaa
aactttcggaaaattgcgctcttcaacaacaagcttactgatgcttgtacacagcacatt
tctcaacttctgaggaccaaggacgatttcctttctctaaggctaggcaacaataatata
acagcggaaggagcaaaacaactggcagagggactgaaattcaatcattcactgcagtat
ttagggctttggggcaacaagataggtgatacaggagcagaagcccttgccaaagcctta
gagagcagcaaaactctggtgtggcttagcttggtaggcaatggtgtagggaatgcagga
gcgagtgccctggccaacattatcaagaacagtccaacactggaagagctttggttgaca
gagaactgcataaccagaacaggggtggaacgtctgattgaagcccttaaacacaacatt
catgtgaaatcaatatggtacatgatgaacactgaactatacagtcgcaaatacaaaagt
tccccctgcttgttgcttatgtggtttgtatatgtgattggtggttgtctgcattctaga
tttggtgcaatgcatggccatactgctagttttagtgctaagaaaaactgtggttgttga
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