Lysobacter capsici: LC55x_2915
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Entry
LC55x_2915 CDS
T04162
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03030
DNA replication
lcp03410
Base excision repair
lcp03420
Nucleotide excision repair
lcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC55x_2915 (ligA)
03410 Base excision repair
LC55x_2915 (ligA)
03420 Nucleotide excision repair
LC55x_2915 (ligA)
03430 Mismatch repair
LC55x_2915 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcp03032
]
LC55x_2915 (ligA)
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_2915 (ligA)
Enzymes [BR:
lcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LC55x_2915 (ligA)
DNA replication proteins [BR:
lcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LC55x_2915 (ligA)
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LC55x_2915 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC55x_2915 (ligA)
MMR (mismatch excision repair)
DNA ligase
LC55x_2915 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LC55x_2915 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
VMAP-M8
DUF7340
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
ALN86180
LinkDB
All DBs
Position
complement(3320192..3322555)
Genome browser
AA seq
787 aa
AA seq
DB search
MTTQSKQDAAQAAQRAAQLRAQLDDANYRYYVLDDPTLTDADYDRLLRELEALEVAHPEL
ASADSPTQRVGNTPSGTFAQVTHVVPMLSLGNAFSDEEVTDFVRKIVERLDTANPEFSVE
PKLDGLAISLRYENGRFVQGATRGDGATGEDVTLNLRTVKAIPMTLRGKDWPPVLEVRGE
VYMPLAAFKTYNEKALKDGGKVLANPRNGAAGSLRQLDPRITAQRPLAFFAYAVGVVEGY
TLPASHSQTLKKLRDWGFPVSAESGVVAGADGLLGYYRQMGAKRDSLPFDIDGVVYKLDD
YAGQREMGFVSRAPRWAIAHKFPAQEQSTVLEGIDIQIGRTGAATPVARLKPVQVAGVVV
TNATLHNADQIARLDVRIGDTVIVRRAGDVIPEIVRVVPEYRNPDAPQWQMPTACPVCGS
EIVREEGEAAWRCSGELSCPAQRKEAIRHFASRRAMDIEGLGDRYIEDLSDLGYLQSVAD
LFKLKLEDLLEMKRRADERDGTTPETVKAGKVATKWADNLIEAIDQSRKTTLERFLFALG
IQHVGENTSKALSGWLGDLQLIRRLPWPVFKRLPDVGGEVARSLGHFFDQPGNQQVIDDL
LERGVQIADTHLPSPKLREGLNLATLLVDMEIPKVTKIRAEQLATAFADAGKLRDAPEHA
YITAGLPADSAQALASWLSVDENAQLLTRVGDALKQLDALTPAASATSVGVLDGKTAVLT
GSLAALTRDEAKARLEALGAKVAGSVSKKTSFVVAGTEAGSKLDKAQELGIEVWDEDQLL
AFLAQNE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacccaatccaagcaagacgccgcccaggcggcccaacgcgccgcgcaactgcgc
gcccagctcgacgacgcgaactaccgctactacgtcctcgacgacccgactctgaccgac
gccgattacgaccggctgctgcgcgagctcgaagcgctggaagtcgctcatcccgagttg
gccagcgccgattcgccgacccagcgggtcggcaacaccccgtcgggcaccttcgcccaa
gtcacccacgtcgtgccgatgctgtcgctgggcaatgccttcagcgacgaggaggtgacc
gacttcgtgcgcaagatcgtcgagcgcctggacaccgccaaccccgagttttcggtcgaa
cccaagctcgacggtctggcgatcagcctgcgctacgagaacggccgcttcgtccagggc
gcgacccgcggcgacggcgccaccggcgaggacgtcaccctcaacctgcgcacggtcaag
gcgattccgatgaccttgcgcggcaaggattggccgccggtgctggaagtgcgcggcgag
gtctacatgccgctggccgcgttcaagacctacaacgaaaaagcgctcaaggacggcggc
aaggtgctggcgaacccgcgcaacggcgcggccggttcgctgcgccagctcgatccgcgc
atcaccgcgcaacggccgctggcgttctttgcctacgcggtcggcgtggtcgagggctac
accttgccggccagccattcgcagacgctgaagaaattgcgcgactggggtttcccggtc
agcgccgagagcggcgtggttgccggcgccgacggtttgctgggctattaccggcagatg
ggcgccaagcgcgattcgctgccgttcgatatcgacggcgtggtctacaagctcgacgac
tacgccggccagcgcgaaatgggtttcgtctcgcgcgcgccgcgctgggcgatcgcgcac
aagttcccggcgcaggagcaatccaccgtgctcgaaggcatcgatatccagatcggccgc
accggcgcggccacgccggtcgcgcggctcaagccggtgcaggtcgccggcgtggtggtg
accaacgcgaccttgcacaacgccgaccagatagcgcgcctggacgtgcgtatcggcgat
acggtgatcgtgcgtcgcgccggcgacgtgatcccggaaatcgtgcgggtcgtgcccgag
taccgcaacccggacgcgccgcaatggcagatgccgaccgcctgcccggtatgcggttcg
gaaatcgtgcgcgaggaaggcgaggcggcgtggcgttgctcgggcgaactgagctgcccc
gcgcagcgcaaggaagccatccgccatttcgcttcgcgtcgggcgatggacatcgaaggc
ctcggcgatcgctacatcgaggacttgtccgacctgggctatctgcaatcggtcgccgac
ctgttcaagctcaagctcgaggatctgctcgagatgaagcgccgcgccgacgagcgcgac
ggcaccacgccggagacggtgaaagccggcaaggtcgcgaccaaatgggccgacaacctg
atcgaggcgatcgatcaaagccgcaagaccacgttggagcgcttcctgttcgcgctcggc
atccagcacgtcggcgaaaacacctccaaggccttgtcgggctggctcggcgatctgcag
ctgatccgccgcctgccgtggccggtgttcaagcgtctgcccgatgtgggcggcgaagtc
gcgcgttcgctcgggcatttcttcgatcagcccggcaaccagcaggtgatcgacgatctg
ctcgaacgcggcgtgcagatcgccgacacccacttgccgtcgccgaaactgcgcgaaggc
ctgaacctggcgaccttgctggtcgacatggaaattcccaaggtcaccaagatccgcgcc
gagcagctcgccaccgcgttcgccgatgccgggaaactgcgcgatgcgcccgagcacgct
tacatcaccgccggattgccggccgacagcgcgcaggcgctggcgtcgtggttgagcgtc
gatgagaacgcgcagttgttgacgcgggtaggggacgcgctgaagcagctcgatgcgttg
acgcctgcggcctcggccacttcggttggcgtgctcgacggtaagaccgcggtgttgacc
ggcagcctggccgcgttgacccgcgacgaagccaaggcgcgtctggaagcgctcggcgcc
aaggtcgccggcagcgtgtcgaagaagaccagtttcgtcgtcgccggcaccgaagccggg
tccaagctcgacaaggcgcaggaactcggcatcgaggtctgggacgaagaccagttgctg
gcgttcctggcgcagaacgaatga
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