Lignipirellula cremea: Pla8534_26570
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Entry
Pla8534_26570 CDS
T06949
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcre
Lignipirellula cremea
Pathway
lcre03030
DNA replication
lcre03410
Base excision repair
lcre03420
Nucleotide excision repair
lcre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pla8534_26570 (ligA_1)
03410 Base excision repair
Pla8534_26570 (ligA_1)
03420 Nucleotide excision repair
Pla8534_26570 (ligA_1)
03430 Mismatch repair
Pla8534_26570 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcre03032
]
Pla8534_26570 (ligA_1)
03400 DNA repair and recombination proteins [BR:
lcre03400
]
Pla8534_26570 (ligA_1)
Enzymes [BR:
lcre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pla8534_26570 (ligA_1)
DNA replication proteins [BR:
lcre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pla8534_26570 (ligA_1)
DNA repair and recombination proteins [BR:
lcre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pla8534_26570 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pla8534_26570 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
Pla8534_26570 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pla8534_26570 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QDU94849
UniProt:
A0A518DSP1
LinkDB
All DBs
Position
3501211..3503220
Genome browser
AA seq
669 aa
AA seq
DB search
MAKAKAGGSRIAELRDEIRRHDQKYYVEAAPEITDLEYDKLMSELKSLEAASGEPIPADS
PTQRIGDEPVPHLVSVAHRLPMLSIDNTYSLEELRQYGARTAKLLKDEPIEWVVELKIDG
VAASLIYEHGVLTCALTRGNGKVGDDITHTVRTIADVPLRLIAANPPALLEVRGEVYMLN
SDLTRLNQQQAEKGLELYKNTRNVTAGTVRLLDARIAAERNLRMFVHGSGYSEGIHAESH
SDFLKEIAGYGLPATPLVATFASFEEAVAHCEEIVLKLDGLDFEVDGLVLKVDRFSQRTK
LGNTAKSPRWIVAYKWEKYEAETRVNAISLQVGKTGTITPVAELEPVEIAQTTVSRCSLH
NFDEIARHDLRVGDTVIVEKAGKIIPHIVRVEKHKRTGRPRKVVEPTTCPVCGGEAGREE
GAAAVRCLNVAGCPKQLHGRIKYFAERNSMDIEGLGEKIVEQLIEAGLIQSVPDLYTLQV
EAVEKLERMGKRSSEKLVEGIQGSKDRGLGRLLNALSIHLIGLNVGVLLADNFGNMEGLQ
NATLEDISAIDGVGDKIAESVHNYLHSEIGQDTIARLKEYGVSMQAVKRKTASNALEGKT
VVVTGTLEKYSRNEIKDLIQQHGGKASGSVSKKTDYLVAGEEAGSKLKKAQELGVAILSE
DDFEKLIGG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcaaaagcaggcggttcccggatcgccgaattgcgtgatgagatccgccgc
cacgaccagaagtattacgtggaagcggcgcctgagatcacggatcttgagtacgacaaa
ctcatgtcggaactgaagtcgctggaggccgcctcgggcgagccgatcccggccgacagc
ccgacgcagcggatcggcgacgagccggtgccgcatctggtctcggtcgcgcatcgcctg
ccgatgctttcgatcgacaatacctattcgctggaagagctgcggcagtacggcgcgcgc
acggccaaactgctgaaagacgagccgatcgaatgggtcgtcgagttgaaaatcgacggc
gtggccgcttccctgatttacgaacacggcgtgctgacctgtgcgctgacccgcggcaac
ggcaaggtcggcgacgacattacgcacacggtgcggaccattgccgatgtgccgctgcgg
ctgatcgcggcgaatccgccggccctgctggaggttcgcggcgaagtctatatgctcaac
tccgacctgacccggctgaaccagcaacaggcggaaaaagggctggagctgtacaaaaat
acgcgcaatgtgacggccggcacggtccgcctgctcgatgcgcggattgcggccgagcgg
aacttgcgcatgtttgtgcacggatccggctattccgaaggcattcatgcggagtcgcac
tccgactttctcaaagagatcgccggctatggcctgcctgccacgcctttggttgcaacc
ttcgccagcttcgaagaggcggtcgctcattgcgaagagatcgtcctcaaactggacgga
ctcgactttgaagtcgacggtctggtgctgaaggtcgatcggttttcgcagcggaccaaa
ctcggcaacacggccaaaagcccccgctggatcgtcgcttacaagtgggaaaagtacgaa
gccgaaacccgcgtgaacgccatcagtctgcaggtcggcaagacgggaacgatcactccc
gtggcggaactggagccggtcgagatcgcgcagacgaccgtcagtcgctgcagcctgcat
aactttgacgagatcgcccggcacgacctgcgcgtgggcgataccgtgattgtcgaaaaa
gccggcaagatcatcccgcacattgtccgcgtggaaaaacacaagcggaccggccgtccg
cgcaaagtcgtggagcctacgacctgccccgtctgcggcggcgaagcgggccgcgaagaa
ggcgccgctgcggtccgctgcctgaacgtggccggctgccccaagcagctgcatggacgg
atcaaatacttcgccgaacggaattcgatggatatcgaaggcctgggcgaaaagatcgtc
gaacagctgatcgaggccggcctgatccagtccgtccccgatctctatacgctgcaggtc
gaagcggttgagaaactggagcggatggggaaacgctcgtccgaaaagctggtcgaaggc
atccagggcagcaaggatcgcggactgggccgactactgaacgccctttcgatccatttg
attggactgaatgtgggcgtgctcctggccgacaattttggcaacatggaagggctgcag
aacgccacgctggaagatatcagcgcgatcgacggcgtcggcgacaagatcgccgagagc
gtgcacaactatctccacagcgaaatcggccaggacaccatcgcccggcttaaggaatac
ggcgtgtcgatgcaggccgtcaaaagaaaaacggccagcaacgcgctcgaggggaaaacg
gtcgtcgtcaccggcacgctggagaagtactcccggaacgagatcaaggatcttatccag
cagcacggcggcaaggcttccggcagcgtttctaaaaagaccgactatctggtcgccggc
gaagaagcaggcagcaagctcaaaaaagcgcaagagcttggagtcgcgatcctcagcgaa
gacgattttgaaaagctgatcggcgggtag
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