Lacticaseibacillus paracasei BD-II: LCBD_1194
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Entry
LCBD_1194 CDS
T01955
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Pathway
lcs03030
DNA replication
lcs03410
Base excision repair
lcs03420
Nucleotide excision repair
lcs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCBD_1194 (lig)
03410 Base excision repair
LCBD_1194 (lig)
03420 Nucleotide excision repair
LCBD_1194 (lig)
03430 Mismatch repair
LCBD_1194 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcs03032
]
LCBD_1194 (lig)
03400 DNA repair and recombination proteins [BR:
lcs03400
]
LCBD_1194 (lig)
Enzymes [BR:
lcs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCBD_1194 (lig)
DNA replication proteins [BR:
lcs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCBD_1194 (lig)
DNA repair and recombination proteins [BR:
lcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCBD_1194 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCBD_1194 (lig)
MMR (mismatch excision repair)
DNA ligase
LCBD_1194 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCBD_1194 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH_8
HHH_3
HHH
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AEA56691
UniProt:
A0A5Q8BS42
LinkDB
All DBs
Position
1164977..1167001
Genome browser
AA seq
674 aa
AA seq
DB search
MLAKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYP
KLVTPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVGHPVDYNV
ELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLSLEVRGECY
MPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEPEQFNV
TTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKVNDLAL
QAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA
TLHNADMIRDKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTPPAPIPEACPSCGQKLV
HLDDEVALRCINPMCPAQVQEQLTHFASRNAMNIDGLGPKIVAQLQAKHLVKDVADLYHL
TAADLAKLDKFKEKSINNLLSAINNSRQNSVERLIFGLGIRHVGGKAARILAEHFGDLDH
LMTASQEAIADVPNIGPTIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSF
VAGKTVVITGKFAEFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNV
PIMNETELLANLKD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgttagcaaaaccagctgcacaattcacacttgaagaagctcaggcggaagtcgaaaag
cttcggaagcaactgaatcaatggcgtcttgagtattacaccaaggatgcgccaactgtg
accgataacgtctatgacgatcattatcgcgatttacaggcactcgaggaggcttatccc
aagctagtcacgcctgattcgccaactcaagaagtcggcgatgtcattaattcggacttt
gccaaggtgcaacacccaattccgatgttgtcgatgggcgatgttttttcgttcgaagag
ctgagtgaatgggatgctcgcatgcaaagcaatgtcggccatccggtggattacaatgtt
gagttgaaaatcgacgggttggctttatctctgatttatgaaaacggcaaactcgttcaa
ggctcaacacgtggtgatggtaatgtcggtgaagatgtgaccagaaatgtgttgaccatt
gcgtcagttcccaagcagttaaagcagccactttcactcgaggtacggggtgaatgttat
atgcctaaggcggcgtttgccaagctgaatgcgcggcaggaaactgagggtggcacgcct
tttgccaatccacgtaacgcggcagctggatcactccgacagttagatgcaaaagtcacc
gctgctcgagagctggataccttcatttatacgttaattgaaccagagcagtttaacgtg
accacgcagcatgaggcgattgcgtttatgcaggcacttggatttacaacaaatccaagt
tcagaagtggctggtgacatgcaggcgattgacacctacattaagaagtacaccaccgac
cgtgatgcgttgccttacggaattgatgggatcgttttgaaagtgaacgatttggcgctg
caagcgcaactaggcaacaccgttaaagtgccacgctgggaaattgcctacaaattccca
cctgaagaagcagagaccgtcattcatgacattgtctggacagttggtcgaaccggtgtg
gtcacgccgactgccgtgatggaccccgttcagcttgctggaaccacagtggcacgggcc
acgttgcacaacgcggatatgattcgtgataaagatattcgcatcggcgacaccgtcatg
ttgcacaaagcaggcgacattattcctgaagtttcgcgggtactggttgctaaacgtcca
gtggatacgccaccggcgccgattccagaggcctgcccatcatgtggccaaaaactggtc
catctcgacgatgaagtagctttgcgttgcatcaacccgatgtgtccggcacaggtccaa
gagcagctcacccattttgcgtctcgcaacgcgatgaatatcgatggcttaggcccgaag
attgtggcacagttgcaggccaagcatctggtaaaagatgtcgctgatttgtatcacctc
acagctgcggatctggcgaaattagataagtttaaagaaaaatcaattaataatttgtta
agtgcgatcaacaacagtcggcaaaactcggtagaacgcctaatctttgggttgggcatt
cggcacgttggcggtaaagccgcacgaattctggccgagcatttcggcgatttggatcat
ctgatgaccgccagtcaagaggcgatcgcagatgtgccaaatatcgggccgaccattgcg
gaagcgatcgtgacgtattttaaagccgcaacggttcaaaagttgatcactcagttgcgc
gaagctgatgttaacctgcgttacaccggaccgaccaaaccagtggtcaaagatagtttt
gttgcaggtaaaaccgttgtgattaccggtaagtttgccgagttttcgcggccagcactc
acgaagcagctagaaggattaggagccaaggtcacaggttcggtttcaaagaaaacggac
ctcctgatcgctggcgacgcggctggcagtaagttggcaaaggcacaaagcttgaatgtc
ccaatcatgaatgagacggaattgctggcgaatttgaaggattga
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integrated database retrieval system
