Leptosomus discolor (cuckoo roller): 104353399
Help
Entry
104353399 CDS
T08399
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104353399 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ldi03000
]
104353399 (KDM2B)
04121 Ubiquitin system [BR:
ldi04121
]
104353399 (KDM2B)
03036 Chromosome and associated proteins [BR:
ldi03036
]
104353399 (KDM2B)
Enzymes [BR:
ldi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104353399 (KDM2B)
Transcription factors [BR:
ldi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104353399 (KDM2B)
Ubiquitin system [BR:
ldi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104353399 (KDM2B)
Chromosome and associated proteins [BR:
ldi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104353399 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104353399 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
F-box-like
F-box
zf-CXXC
LRR_4
AppA_SCHIC
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
104353399
NCBI-ProteinID:
XP_009958271
LinkDB
All DBs
Position
Unknown
AA seq
664 aa
AA seq
DB search
MKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICN
EIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQK
MNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEKPQEP
TMRKRLKLGKEDKLFRKKRRSWKAPDDRTAVIKPLRRLKQEPEDDLPEAPPRSKDSDQSR
SSSPTAGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQP
IKSEPESENEEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSP
PKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTW
NRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLR
DLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKL
RNIIELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTE
INLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLL
QKLS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttgggggacctggcaggatgaaacagtcctgtattatgaggcagtgtatc
gcacctgtgttgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagaggac
acggtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgtaac
gaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgatgag
ctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaacaaaag
cgcggaccaggattcaaatacgcatcaaatctcccaggctcgttgctgaaggaacagaaa
atgaaccgagacaataaggaagtaacagatgctgcgaaacggaaaggggattgtgaagaa
actcccaggcggaaatcggaggaacattccaagaagactcaagttgactcaatcctgagg
agaaagtcagacgaagtgcatctgtggaggaaaaggaaatttgagaaaccccaggaaccc
actatgagaaagcggctaaaactgggaaaagaagacaaactcttcaggaagaagcggcga
tcatggaaggctccagatgaccgaactgccgtgatcaaacccctgcggcgcctcaagcag
gagccagaggatgacctgccagaagcacctcccaggtccaaggatagtgaccagtcacgg
tccagctcgcccactgcaggtcccagcacggagggtgccgagcccagggacaagaagaag
ttcaagatgaggaggaaaaggcggcttcccaataaggaactgagcaaggagctcagcaag
gagcttaaccaggagatccaaaaaaccgagaacagccttgccaatgagaatcaccaaccc
atcaaatctgaacccgagagcgagaacgaggaacctaagcgtgctttgaacaacagcgag
agactccataggttcagcaaagggttaaacgggactccccgggagctgaggcaccagctc
atccccagcctgcgaagcacacctcggggaataacccggccaccaccttcgctctctcct
cccaaatgcattcagatggaacggcacgttatccggccgcctcccatcagcccccctccg
gactcgctccccctggatgacggggcagcccacgtgatgcagagggaagtctggatggct
gtctttagctacctcagtcatagagacttgtgcatctgtatgagagtttgcaagacctgg
aacagatggtgctgtgacaaaagattatggaccaaaatagatttaaaccattgtaaatcc
atcactccacttatgcttagtggcattattaggagacagcctgtaacccttgatcttagc
tggactaatatatctaaaaagcagctgagttggcttatcaacagactgccaggtcttcga
gacctgctgttgtcagggtgctcatggatagcagtgtcggcactttgtagttccagttgt
cctttactccgaactctggacgtgcagtgggcagaaggactgaaagacgcacaaatgaga
gacctcttgtcaccacccacagataaccggccaggtcagatcgacaaccggagtaaacta
cggaacatcattgagctgcgcttggccggcctggatattacagacgcttccttgcggctg
atcataaggcacatgcctctgctctccaaactcaatcttagttactgtaatcacgtgaca
gatcagtctattaacctgctgaccgcggtcggaaccaccacgcgggattcattaacagaa
attaatttatcagactgcaataaggttactgaccagtgcctgtcttacttcaaacgttgc
ggaaacatctgccagatcgacctgaggtactgcaagcaagtgacgaaggaaggctgcgag
cagttcatcgcagagatgtcagtgagtgttcagtttgggcaagtggaagaaaaacttctg
cagaaactgagttag
DBGET
integrated database retrieval system
