Leuconostoc sp. C2: LGMK_08425
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Entry
LGMK_08425 CDS
T01567
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lec
Leuconostoc sp. C2
Pathway
lec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGMK_08425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lec03019
]
LGMK_08425
03400 DNA repair and recombination proteins [BR:
lec03400
]
LGMK_08425
Enzymes [BR:
lec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGMK_08425
Messenger RNA biogenesis [BR:
lec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGMK_08425
DNA repair and recombination proteins [BR:
lec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LGMK_08425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HHH
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AEJ31734
LinkDB
All DBs
Position
complement(1699268..1701073)
Genome browser
AA seq
601 aa
AA seq
DB search
MQKPREILKEVFGYDDFRTGQLDIIEKVLAHKHALAIMPTGGGKSITYQLPALMFQGITL
VISPLISLMKDQVDGLDAMGIAATFLNSTLSGQVQAQRMSDLRQGVYKMLYVSPERLEIP
SFFSFIQQLPIELIAIDEAHVMSQWGHDFRPSYLNILPLLAEIPGRPAVLGLTATATDRV
RQNLQQLLEVPDENTVLTGFARDNLALKIARNVDKRQYVQDYLRENKEHSGIIYAATRKQ
VDELYDFLNKKGVKAGHYHAGLPERERQAMQEAFLFDEVQVIVATNAFGMGINKPNVRFV
IHYSVPGNIEAYYQEIGRAGRDGLPSEAILLYAPQDIHLQEFFVQKSEGTEAHKQNEYNK
IREMNAFANTQTCLPRYLLGYFGEMIDHDCGQCSNCLDSREMVDVTTDSQRVLANVVRMN
QSFGKAMVAKVLKGSQDAAVKKYDYLMKLPTYGLMKDRTIKDLSSFIDYLTADGYLRIEG
GEFPVLKVTEMGARVLKGQLVVEKRLNRRVIAQQKVTSAAKGLKLSDSDNRLFAALKAKR
LELAREAGIAPFLIFSDKTLMNMAILRPKTAEEFLAISGVGEKKFDIYHDAFAEVLKNDM
N
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaccgcgtgaaattttaaaagaagtatttgggtacgatgattttcgtacagga
caattagatattattgaaaaagtattggcgcataaacatgcgttagccattatgcccact
ggtggtgggaaatcgattacatatcaattaccagcattgatgtttcaaggcatcacgttg
gtgatctcgccattaatatcattgatgaaggatcaagtcgatggcttagatgcgatggga
attgcagcaacctttttaaattcaacgttgagtggtcaagttcaggcacaacgcatgtct
gacttacgtcaaggtgtttataaaatgctttatgtatcccctgaaaggctagaaattcca
agtttttttagttttattcagcaactaccaatcgaattaatagccattgatgaggcgcat
gtcatgtcacaatggggccatgattttcgaccaagttaccttaatattttaccgttattg
gctgaaattcctggtcgtccagcggttttgggtttgacagcgactgcaacagatcgtgtt
cgtcagaatttacagcaattgttagaagtaccggatgaaaatacagttttaacaggcttt
gctcgtgataatttagcgttaaaaattgcacgtaacgttgataaacggcaatatgtacaa
gattatttacgtgaaaataaagaacacagtggcattatttatgctgctacgcgcaagcaa
gtagatgaattgtacgattttttaaataaaaaaggcgttaaggctggacattatcatgct
ggtttaccagagcgtgaacgtcaagcgatgcaagaggcttttttgtttgatgaagtacaa
gtgattgttgcaaccaatgcgtttggcatgggtattaacaagccaaacgtacgctttgtt
attcactactcagtaccgggaaatattgaagcctattatcaagaaattggtcgtgctggg
cgtgatgggttaccatctgaggcgatattattatatgcaccacaagatattcatttacaa
gaattttttgtccaaaaatcagaagggacagaagcgcataagcaaaatgaatataacaaa
attcgtgaaatgaatgcatttgctaacacacaaacatgtttaccaagatatttattaggt
tattttggggaaatgattgatcatgattgtggtcagtgttctaattgcttagattcacgt
gaaatggttgatgtcacaaccgattctcagcgtgtgttagccaatgttgtacgcatgaac
caaagctttggaaaagcgatggttgctaaagttttaaagggctcacaagatgctgctgtg
aagaagtatgactatttgatgaagttacccacatatggcttgatgaaagacagaacgatt
aaagacctgagtagttttattgactatttaacggctgatggctatctcagaattgagggt
ggtgagtttcctgtcttaaaagtcaccgaaatgggcgcacgtgttttaaaaggccagctc
gttgttgaaaagcgactgaatcgacgcgtgattgcacaacaaaaagttacatcagcagct
aagggacttaaattgtctgatagtgacaatcgattgtttgctgcgttgaaagctaagcgt
ttagagttggcacgtgaagcgggtattgcgccgtttttaattttctcggataaaacctta
atgaatatggcaattttacgacctaaaacggccgaagagtttttagctatttctggtgtt
ggtgagaaaaagtttgatatttatcatgacgcatttgcagaagtactaaaaaatgatatg
aattaa
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