Lelliottia jeotgali: LJPFL01_2981
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Entry
LJPFL01_2981 CDS
T05035
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lef
Lelliottia jeotgali
Pathway
lef03030
DNA replication
lef03410
Base excision repair
lef03420
Nucleotide excision repair
lef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJPFL01_2981
03410 Base excision repair
LJPFL01_2981
03420 Nucleotide excision repair
LJPFL01_2981
03430 Mismatch repair
LJPFL01_2981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lef03032
]
LJPFL01_2981
03400 DNA repair and recombination proteins [BR:
lef03400
]
LJPFL01_2981
Enzymes [BR:
lef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LJPFL01_2981
DNA replication proteins [BR:
lef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LJPFL01_2981
DNA repair and recombination proteins [BR:
lef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LJPFL01_2981
NER (nucleotide excision repair)
GGR (global genome repair) factors
LJPFL01_2981
MMR (mismatch excision repair)
DNA ligase
LJPFL01_2981
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LJPFL01_2981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASV56344
LinkDB
All DBs
Position
complement(3181396..3183411)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTQLRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETQHPDLITPDSPTQ
RVGAAPLASFSQVRHEVPMLSLDNVFDEDSFLAFNKRVQDRLKSAEVLTWCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLRGENIPARLEVRGEVFLPQAG
FEKINDEARRTGGKLFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKEWGLPVSNRVKLCDSPEAVLAFYHQVEADRPSLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIEFPTHCPVCGSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFHLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLELLEK
ASIDDLQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIHWPAPVVVNVEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMIRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcacacagctacgaaccacacttcgccatcatgaatat
ttgtatcacgtgatggacgcaccggagattccggatgcggagtatgaccgtctgatgcgc
gaactgcgcgagctagaaacacaacaccccgatctcatcaccccggactcaccgacgcag
cgcgtgggtgcggctccgctggcctctttcagtcaggtgcgtcatgaagtgccgatgctg
tcactggataacgttttcgacgaagacagttttctcgcgtttaacaagcgtgtccaggac
cgactgaaaagcgctgaagtgctgacgtggtgctgcgagctgaagctcgatggtctggcg
gtgagcatcttgtatgaaaacggcgtgctggtgcgcgccgccacgcgcggcgatggcaca
accggtgaagacatcaccaccaacgtgcggaccatccgcgcaataccacttaagctgcgc
ggcgagaacattcccgcacgcctcgaagtgcgcggtgaagtgttcctcccgcaggctggc
tttgaaaagattaacgatgaagcgcgtcgcaccggtgggaagctgtttgctaacccgcgt
aatgctgcggcaggatctctgcgtcagcttgatccacggataacggcgaagcgcccactg
acgttcttctgctacggcgtgggtattcttgagggcggagaactgcctgatacccatctg
ggtcgcctgctgcaatttaaagagtggggactgccggtcagtaatcgggtgaaactttgc
gactcaccggaagcggtgctggcattttatcatcaggtcgaagcggaccgtccgtcactc
gggtttgatatcgatggcgtggtcatcaaagtgaactcgctggcgcttcaggaacagtta
ggttttgtggcccgtgcaccgcgttgggcggtggcctttaaattccccgctcaggaacag
atgaccttcgtgcgcgacgtggaatttcaggtaggccgtaccggggcgattaccccggtc
gcacgtctggaacctgttcaggtcgcgggtgttttggtcagcaatgcgactctgcataac
gctgatgaaattgcacgtctgggcctgcggattggcgataaagtcgttattcgtcgcgcg
ggtgatgtgatcccccaggtggtgaacgttgtcgaatctgaacgccctgatgacacccgt
gccattgaatttccgacccactgtcctgtatgtggttctgacgttgagcgcgtagagggc
gaggtcgtgacgcgctgcactggcgggttaatctgcggggctcagcgcaaagaagcgctc
aaacacttcgtctcccgtcgggcgatggatgtcgacgggatgggcgataaaattatcgat
caactggtcgagaaagagtatgtccacacgcctgctgatctgttccacttgacggctgga
aagctgacaggactggatcgcatggggccaaaatccgcgcaaaacgtggtgaatgcgctg
gagaaagccaaagaaacgaccttcgcacggttcttgtatgctctgggtattcgtgaagtc
ggcgaggcgaccgctgccggactggctgctcatttcggtacgcttgagctgctcgaaaag
gcctcgattgacgatctgcaaaaagtgccggacgtcggtatcgtcgttgccactcacgtc
tttaacttctttgcggaagagagcaaccgcgaagtgatcggtaaattgctggaagagggt
attcactggcccgcaccggttgtcgtcaacgtcgaagagatcgacagcccgtttgcgggc
aaaaccgtggtactcaccggcagcctgagtcagttgtcccgtgacgacgccaaagcgcga
ctggtggcgctgggtgcaaaagtggcgggcagtgtatcgaagaaaaccgatctggtgatt
gccggtgaagcggcaggctcgaaactggcgaaagcgcaggagctgggcattgaagttatc
gacgaagccgaaatgattaggctattgggagagtaa
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